当前解析结果
SmilChr03G002105| 统一新 Gene ID | SmilChr03G002105 |
|---|---|
| 名称 | SmilChr03G002105 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 32761755 - 32764157 / - |
| NCBI Gene ID | LOC131018668 |
|---|---|
| GeneID | 131018668 |
| locus_tag | - |
| NCBI Name | LOC131018668 |
| 原始查询 | SmilChr03G002105 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 |
| Arabidopsis | AT5G24080 (AT5G24080)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832473] identity=30.5; qcov=1.03; evalue=1.73e-104; confidence=low |
| Rice | Os04g0202800 (OsRLCK136)- identity=45.4; qcov=0.991; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018668 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803364.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803364.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803364.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803364.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803364.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:32761810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B126,B33,C12,D6 |
Chr3:32761923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:32761950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr3:32761995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B126,B33,C12,D6 |
Chr3:32762009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B117,B83,C27,D4 |
Chr3:32762013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr3:32762113 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B55,C1 |
Chr3:32762198 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B68,C62 |
Chr3:32762198 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B68,C62 |
Chr3:32762329 |
A |
ATT |
2bp_insertion | frameshift_variant | 2 | B108,C36 |
Chr3:32762329 |
A |
ATT |
2bp_insertion | CDS_variant | 2 | B108,C36 |
Chr3:32762366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803364.1PF01453
B_lectin 77-165 aa
PF07714
PK_Tyr_Ser-Thr 511-780 aa
PF00069
Pkinase 512-779 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803364.1 |
Pfam | PF01453 |
B_lectin | Repeat | 77 | 165 | 2e-12 | 48.2 | D-mannose binding lectin |
XP_057803364.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 511 | 780 | 6.1e-44 | 151.0 | Protein tyrosine and serine/threonine kinase |
XP_057803364.1 |
Pfam | PF00069 |
Pkinase | Domain | 512 | 779 | 1.2e-45 | 156.7 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。