Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002111

染色体: Chr03 坐标: 32855774-32858963 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002111
名称SmilChr03G002111
描述ADP,ATP carrier protein 1, mitochondrial-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向32855774 - 32858963 / -

ID 对照

NCBI Gene IDLOC131014073
GeneID131014073
locus_tag-
NCBI NameLOC131014073
原始查询SmilChr03G002111

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ADP,ATP carrier protein 1, mitochondrial-like
产物ADP%2CATP carrier protein 1%2C mitochondrial-like
ArabidopsisAT5G13490 (AAC2)
ADP/ATP carrier 2 [Source:NCBI gene (formerly Entrezgene);Acc:831193]
identity=80.1; qcov=0.997; evalue=0; confidence=high
RiceOs02g0718900 (ant)
-
identity=77.8; qcov=1.01; evalue=0; confidence=high
GOGO:0005471 (ATP:ADP antiporter activity); GO:0005743 (mitochondrial inner membrane); GO:0140021 (mitochondrial ADP transmembrane transport); GO:1990544 (mitochondrial ATP transmembrane transport)
KEGG-
PfamPF00153 (Mito_carr)
InterPro-
eggNOG-
NRGeneID:131014073

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057797977.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057797977.1
3 Mitochondrion inner membrane 线粒体内膜 1.00000 XP_057797977.1
4 Nucleus 细胞核 0.00000 XP_057797977.1
5 Chromosome 染色体 0.00000 XP_057797977.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:32856836 G A EMS_canonical_SNV CDS_variant 4 B91,B95,B98,C50
Chr3:32857316 G A EMS_canonical_SNV CDS_variant 1 B104
Chr3:32857518 G A EMS_canonical_SNV CDS_variant 2 C64,C66
Chr3:32857534 C T EMS_canonical_SNV CDS_variant 4 B17,B21,C28,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057797977.1
388 aa
N
1
194
388
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 88-183 aa PF00153 Mito_carr 191-285 aa PF00153 Mito_carr 291-380 aa
XP_057797978.1
388 aa
N
1
194
388
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 88-183 aa PF00153 Mito_carr 191-285 aa PF00153 Mito_carr 291-380 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797977.1 Pfam PF00153 Mito_carr Repeat 88 183 2e-68 226.9 Mitochondrial carrier protein
XP_057797977.1 Pfam PF00153 Mito_carr Repeat 191 285 2e-68 226.9 Mitochondrial carrier protein
XP_057797977.1 Pfam PF00153 Mito_carr Repeat 291 380 2e-68 226.9 Mitochondrial carrier protein
XP_057797978.1 Pfam PF00153 Mito_carr Repeat 88 183 2e-68 226.9 Mitochondrial carrier protein
XP_057797978.1 Pfam PF00153 Mito_carr Repeat 191 285 2e-68 226.9 Mitochondrial carrier protein
XP_057797978.1 Pfam PF00153 Mito_carr Repeat 291 380 2e-68 226.9 Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057941995.1
TATTTCAGTAGATATTTTTATAAATAAATAAAAAAAAAAGGAAAAAGAAGGTACCCACTATTTGACAGTGCAGTTACCTCACCTCTATTGAATCGCGTACAAATTGCTAGGTCAAGGCGGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGCTTGAGCAAAGGAAGCAATGTCTATGGATCGGCCACACTACCCCACCACCGCTCAGAAAGTGGCTGGGCAGCTTTTCAGATCAACCCCCACTCAGCATTTT...
XM_057941994.1
AAATTGCTAGGTCAAGGCGGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGCTTGAGCAAAGGTACCACTCTCTTCGTTTCTCTAAATTCATGATTGATTTCTGATTTTGGAATTGCGCTCTACTATGTACCGATCTGCCTGTTATTAGAATTCTGTGTAATGTGTTTGGTTTCTGCTGTTTTCTTTGTAATTTGCTTTGATTTGTTGCCTTTTCATTTCATATATCGTACTCAAATTTTAGATCTGATGGA...

CDS

2 records

下载 CDS FASTA
LOC131014073
ATGTCTATGGATCGGCCACACTACCCCACCACCGCTCAGAAAGTGGCTGGGCAGCTTTTCAGATCAACCCCCACTCAGCATTTTGGAGCCTTTGAAGGTGGTCAGTCTCGACCATCTTTATATCAATCACAATTCAAATATGGGAACTACACTAACGCTGCATTGACATATCCATGTCAAATGACATGTGACCTTTCTGTGGTCAAGTCTACCGTCTCCCCAATTTTTGCGCAAGCCCCTGCAGAGAAAGGATTTGCGGG...
LOC131014073
ATGTCTATGGATCGGCCACACTACCCCACCACCGCTCAGAAAGTGGCTGGGCAGCTTTTCAGATCAACCCCCACTCAGCATTTTGGAGCCTTTGAAGGTGGTCAGTCTCGACCATCTTTATATCAATCACAATTCAAATATGGGAACTACACTAACGCTGCATTGACATATCCATGTCAAATGACATGTGACCTTTCTGTGGTCAAGTCTACCGTCTCCCCAATTTTTGCGCAAGCCCCTGCAGAGAAAGGATTTGCGGG...

Protein

2 records

下载 Protein FASTA
XP_057797977.1
MSMDRPHYPTTAQKVAGQLFRSTPTQHFGAFEGGQSRPSLYQSQFKYGNYTNAALTYPCQMTCDLSVVKSTVSPIFAQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKTGRLSKPYGGIGECFSRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLASDGIAGLYRGFN...
XP_057797978.1
MSMDRPHYPTTAQKVAGQLFRSTPTQHFGAFEGGQSRPSLYQSQFKYGNYTNAALTYPCQMTCDLSVVKSTVSPIFAQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKTGRLSKPYGGIGECFSRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLASDGIAGLYRGFN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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