当前解析结果
SmilChr03G002123| 统一新 Gene ID | SmilChr03G002123 |
|---|---|
| 名称 | SmilChr03G002123 |
| 描述 | pheophytinase, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 33009395 - 33015750 / + |
| NCBI Gene ID | LOC131014068 |
|---|---|
| GeneID | 131014068 |
| locus_tag | - |
| NCBI Name | LOC131014068 |
| 原始查询 | SmilChr03G002123 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pheophytinase, chloroplastic |
| 产物 | pheophytinase%2C chloroplastic |
| Arabidopsis | AT5G13800 (PPH)pheophytinase [Source:NCBI gene (formerly Entrezgene);Acc:831225] identity=57.9; qcov=0.899; evalue=0; confidence=high |
| Rice | Os06g0354700 (NYC3)- identity=64.1; qcov=0.836; evalue=0; confidence=high |
| GO | GO:0009507 (chloroplast); GO:0015996 (chlorophyll catabolic process); GO:0080124 (pheophytinase activity) |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF10230 (LIDHydrolase); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014068 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057797973.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057797973.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.40000 | XP_057797973.1 |
| 4 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057797973.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057797973.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:33010306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B91,B95,B98,C50 |
Chr3:33010307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C12,D6 |
Chr3:33010310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C12,D6 |
Chr3:33010360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C12,D6 |
Chr3:33010381 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B90,B92 |
Chr3:33010381 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B90,B92 |
Chr3:33010598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:33010652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:33010813 |
AG |
A |
1bp_deletion | frameshift_variant | 4 | B38,B39,B77,B99 |
Chr3:33010813 |
AG |
A |
1bp_deletion | CDS_variant | 4 | B38,B39,B77,B99 |
Chr3:33010874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B135,B7 |
Chr3:33010949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B75,C12,D11,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797973.1PF00561
Abhydrolase_1 155-438 aa
PF12697
Abhydrolase_6 157-443 aa
PF12146
Hydrolase_4 158-410 aa
PF10230
LIDHydrolase 241-436 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797973.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 155 | 438 | 2e-20 | 74.2 | alpha/beta hydrolase fold |
XP_057797973.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 157 | 443 | 1.2e-19 | 72.5 | Alpha/beta hydrolase family |
XP_057797973.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 158 | 410 | 4e-08 | 33.6 | Serine aminopeptidase, S33 |
XP_057797973.1 |
Pfam | PF10230 |
LIDHydrolase | Family | 241 | 436 | 2e-06 | 28.4 | Lipid-droplet associated hydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。