当前解析结果
SmilChr03G002133| 统一新 Gene ID | SmilChr03G002133 |
|---|---|
| 名称 | SmilChr03G002133 |
| 描述 | heat shock factor-binding protein-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 33216882 - 33217215 / - |
| NCBI Gene ID | LOC131014086 |
|---|---|
| GeneID | 131014086 |
| locus_tag | - |
| NCBI Name | LOC131014086 |
| 原始查询 | SmilChr03G002133 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heat shock factor-binding protein-like |
| 产物 | heat shock factor-binding protein-like |
| Arabidopsis | AT4G15802 (HSBP)heat shock factor binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827261] identity=69; qcov=1.02; evalue=1.84e-35; confidence=medium |
| Rice | Os06g0274000 (OsHSBP2)- identity=64.2; qcov=0.953; evalue=1.06e-27; confidence=medium |
| GO | GO:0003714 (transcription corepressor activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0070370 (cellular heat acclimation) |
| KEGG | - |
| Pfam | PF06825 (HSBP1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014086 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057797995.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057797995.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057797995.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057797995.1 |
| 5 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057797995.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:33216901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,B90,B92 |
Chr3:33216967 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C12,D6 |
Chr3:33216969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B14,B59,B78,C23 |
Chr3:33216980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B14,B78,C23 |
Chr3:33217008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:33217010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B25,B39,B88 |
Chr3:33217057 |
G |
A |
EMS_canonical_SNV | stop_gained | 60 | A11,A15,A2,A20,A23,A4,A7,B100,B102,B105,B107,B111,B114,B118,B12,B121,B18,B22,B23,B26,B28,B3,B31,B32,B45,B56,B59,B6,B61,B73,B77,B83,B86,B88,B89,B94,B96,C11,C12,C15,C16,C25,C30,C34,C38,C39,C54,C65,C72,C74,C76,C77,C8,C82,C87,C9,D10,D11,D3,D8 |
Chr3:33217069 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C4 |
Chr3:33217069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr3:33217076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C12,D6 |
Chr3:33217078 |
G |
A |
EMS_canonical_SNV | stop_gained | 52 | A11,A15,A2,A20,A23,A7,B100,B102,B107,B111,B118,B12,B121,B18,B23,B26,B28,B3,B31,B32,B45,B56,B59,B6,B61,B73,B77,B83,B86,B88,B89,B94,B96,C11,C12,C15,C16,C25,C30,C34,C38,C39,C72,C74,C76,C77,C87,C9,D10,D11,D3,D8 |
Chr3:33217112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B59,B78,C23,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797995.1PF06825
HSBP1 13-60 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797995.1 |
Pfam | PF06825 |
HSBP1 | Coiled-coil | 13 | 60 | 3.7e-22 | 78.6 | Heat shock factor binding protein 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。