当前解析结果
SmilChr03G002136| 统一新 Gene ID | SmilChr03G002136 |
|---|---|
| 名称 | SmilChr03G002136 |
| 描述 | uncharacterized SmilChr03G002136 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 33240495 - 33246952 / - |
| NCBI Gene ID | LOC131018675 |
|---|---|
| GeneID | 131018675 |
| locus_tag | - |
| NCBI Name | LOC131018675 |
| 原始查询 | SmilChr03G002136 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=39.6; qcov=0.136; evalue=1.61e-11; confidence=weak |
| Rice | Os04g0191000- identity=29.2; qcov=0.317; evalue=3.13e-19; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF29688 (TnsB_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018675 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057803371.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057803371.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803371.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803371.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803371.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:33240518 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,C27,C55 |
Chr3:33240520 |
CT |
C |
1bp_deletion | frameshift_variant | 37 | A10,A23,A24,A3,B108,B12,B122,B130,B137,B21,B24,B3,B31,B33,B35,B39,B40,B50,B63,B74,B76,B83,B85,B9,B90,C10,C25,C27,C4,C42,C49,C55,C61,C77,C79,D1,D5 |
Chr3:33240533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,C27,C55 |
Chr3:33240540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B126 |
Chr3:33240545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C42 |
Chr3:33240552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr3:33240556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C24 |
Chr3:33240570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C60 |
Chr3:33240571 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:33240578 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D1 |
Chr3:33240578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr3:33240594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B35,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803371.1PF17919
RT_RNaseH_2 136-219 aa
PF17917
RT_RNaseH 150-248 aa
PF00075
RNase_H 297-380 aa
PF13456
RVT_3 300-417 aa
PF17921
Integrase_H2C2 509-564 aa
PF00665
rve 583-679 aa
PF29688
TnsB_C 640-700 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803371.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 136 | 219 | 8.6e-17 | 61.8 | RNase H-like domain found in reverse transcriptase |
XP_057803371.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 150 | 248 | 1.2e-19 | 71.1 | RNase H-like domain found in reverse transcriptase |
XP_057803371.1 |
Pfam | PF00075 |
RNase_H | Domain | 297 | 380 | 8.3e-09 | 36.5 | RNase H |
XP_057803371.1 |
Pfam | PF13456 |
RVT_3 | Domain | 300 | 417 | 1.5e-19 | 70.8 | Reverse transcriptase-like |
XP_057803371.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 509 | 564 | 5e-09 | 36.9 | Integrase zinc binding domain |
XP_057803371.1 |
Pfam | PF00665 |
rve | Domain | 583 | 679 | 1.9e-18 | 67.3 | Integrase core domain |
XP_057803371.1 |
Pfam | PF29688 |
TnsB_C | Domain | 640 | 700 | 4.4e-09 | 37.0 | TnsB C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。