当前解析结果
SmilChr03G002159| 统一新 Gene ID | SmilChr03G002159 |
|---|---|
| 名称 | SmilChr03G002159 |
| 描述 | uncharacterized SmilChr03G002159 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 33621124 - 33622008 / + |
| NCBI Gene ID | LOC131018682 |
|---|---|
| GeneID | 131018682 |
| locus_tag | - |
| NCBI Name | LOC131018682 |
| 原始查询 | SmilChr03G002159 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os01g0595300; species=rice; confidence=low |
| 产物 | hit=Os01g0595300; species=rice; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=27; qcov=0.793; evalue=2.4e-23; confidence=low |
| Rice | Os01g0595300- identity=26; qcov=0.915; evalue=4.07e-28; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018682 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057803379.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057803379.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803379.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803379.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803379.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:33621132 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B59,C14,C18,C51,C54 |
Chr3:33621156 |
G |
A |
EMS_canonical_SNV | stop_gained | 25 | A14,A18,A20,B113,B124,B128,B130,B131,B136,B138,B26,B3,B37,B44,B45,B54,B80,B95,C25,C43,C46,C73,C77,C79,C84 |
Chr3:33621165 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr3:33621176 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C71 |
Chr3:33621176 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C71 |
Chr3:33621178 |
G |
GT |
1bp_insertion | frameshift_variant | 128 | A1,A10,A15,A16,A18,A22,A3,A6,A8,A9,B10,B100,B103,B107,B109,B110,B111,B112,B115,B117,B118,B120,B122,B126,B127,B129,B132,B133,B134,B139,B14,B140,B19,B2,B20,B21,B22,B23,B26,B27,B29,B3,B30,B31,B33,B36,B40,B41,B42,B43,B44,B47,B49,B5,B51,B52,B53,B55,B56,B57,B62,B65,B66,B68,B70,B72,B73,B74,B75,B76,B78,B82,B87,B88,B89,B91,B96,C1,C10,C12,C15,C16,C17,C2,C22,C23,C26,C29,C3,C30,C32,C34,C35,C38,C41,C43,C44,C45,C47,C48,C5,C56,C6,C60,C62,C63,C64,C67,C68,C7,C71,C74,C75,C76,C77,C78,C80,C81,C82,C83,C85,C86,C87,D1,D10,D11,D2,D3 |
Chr3:33621193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,B10,B77,D7 |
Chr3:33621208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr3:33621218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr3:33621283 |
C |
T |
EMS_canonical_SNV | stop_gained | 21 | A1,B1,B127,B133,B14,B27,B41,B44,B5,B51,B53,B57,B66,B7,B89,C10,C17,C29,C74,C87,D2 |
Chr3:33621286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr3:33621301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B34,B4,B99 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803379.1PF00872
Transposase_mut 26-125 aa
PF10551
MULE 27-121 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803379.1 |
Pfam | PF00872 |
Transposase_mut | Family | 26 | 125 | 3.1e-11 | 43.5 | Transposase, Mutator family |
XP_057803379.1 |
Pfam | PF10551 |
MULE | Domain | 27 | 121 | 5.9e-21 | 75.4 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。