Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002162`

染色体: Chr03 坐标: 33654944-33657385 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002162`
名称	SmilChr03G002162
描述	uncharacterized SmilChr03G002162
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	33654944 - 33657385 / `-`

ID 对照

NCBI Gene ID	`LOC131016395`
GeneID	`131016395`
locus_tag	`-`
NCBI Name	`LOC131016395`
原始查询	`SmilChr03G002162`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Neutral/alkaline non-lysosomal ceramidase [Source:NCBI gene (formerly Entrezgene);Acc:818379]; symbol=AT2G38010; hit=AT2G38010; species=arabidopsis; confidence=weak
产物	Neutral/alkaline non-lysosomal ceramidase [Source:NCBI gene (formerly Entrezgene);Acc:818379]; symbol=AT2G38010; hit=AT2G38010; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G38010` (AT2G38010) Neutral/alkaline non-lysosomal ceramidase [Source:NCBI gene (formerly Entrezgene);Acc:818379] identity=67.5; qcov=0.286; evalue=2.11e-12; confidence=weak
Rice	`-` -
GO	GO:0005576 (extracellular region); GO:0017040 (N-acylsphingosine amidohydrolase activity); GO:0042759 (long-chain fatty acid biosynthetic process); GO:0046512 (sphingosine biosynthetic process); GO:0046514 (ceramide catabolic process)
KEGG	-
Pfam	PF04734 (Ceramidase_alk)
InterPro	-
eggNOG	-
NR	GeneID:131016395

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.60000	`XP_057801076.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057801076.1`
3	Chloroplast	叶绿体	0.20000	`XP_057801076.1`
4	Nucleus	细胞核	0.00000	`XP_057801076.1`
5	Chromosome	染色体	0.00000	`XP_057801076.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:33656290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B12,B55,B73,C9
`Chr3:33656536`	`T`	`TCC`	2bp_insertion	frameshift_variant	24	A16,A19,A2,A3,B112,B115,B122,B126,B127,B17,B50,B78,B83,C14,C17,C27,C36,C52,C64,C74,D2,D4,D6,D8
`Chr3:33656540`	`AAC`	`A`	2bp_deletion	frameshift_variant	23	A16,A19,A2,A3,B112,B115,B122,B126,B127,B17,B50,B78,B83,C14,C17,C27,C36,C52,C74,D2,D4,D6,D8
`Chr3:33657043`	`AC`	`A`	1bp_deletion	frameshift_variant	3	B114,B25,B88
`Chr3:33657043`	`AC`	`A`	1bp_deletion	CDS_variant	3	B114,B25,B88
`Chr3:33657100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B11,C58
`Chr3:33657115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B34,B4,B99
`Chr3:33657190`	`CAA`	`C`	2bp_deletion	frameshift_variant	70	A14,A16,A20,A22,A23,A25,A5,A6,A7,B101,B102,B107,B109,B113,B114,B117,B119,B121,B124,B128,B130,B131,B134,B136,B137,B138,B15,B18,B25,B26,B3,B32,B4,B40,B45,B48,B54,B6,B60,B63,B69,B70,B80,B81,B85,B95,B99,C11,C15,C2,C22,C25,C26,C27,C31,C34,C37,C38,C46,C49,C50,C57,C61,C67,C69,C70,C71,C73,C79,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801076.1

140 aa

140

Ceramidase_alk

PF04734 Ceramidase_alk 48-83 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801076.1`	Pfam	`PF04734`	Ceramidase_alk	Domain	48	83	9.2e-09	35.2	Neutral/alkaline non-lysosomal ceramidase, N-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

28 records

下载 cDNA FASTA

XR_009098945.1
TTTTTACAAGTGTTTATAAGAAAAGGGCATTTTTGCCTATTAACACATTAAGAAATCTATACCATTCTAACTCAAAGAAGAACCGAAGAGATCTCCAAACACCTGTTCCAAGATTTTGGCCATCAATCGCACGGAGTACCACCACCGTCAAAACATGTCCTGCAACGATGGGGTTTGCTTTTGCTGCTTATACAACTGATGGGCCTGGGGTTTTTGATTTCAAGCAAGGAAAAGATCGTGTGGAACGGATATGCACTTGC...

XR_009098956.1
TCTATACCATTCTAACTCAAAGAAGAACCGAAGAGATCTCCAAACACCTGTTCCAAGGGAACGGATATGCACTTGCTGAGTTTGATGATGGGGGCTATGATCGGTCGGAGCTGTGGTTACCCCAGGGGTAGGGGATGAGAAGACGATTATTAAATATCTAACTGGTGAGTTCTCTTGCGCGAAAGCCTTTCCAGCCCGGAGCTGAGCCAATTTTCTGTCATCATATTAGATGAAGTTCATGAGAGGCTGCACAGGTATTG...

CDS

1 records

下载 CDS FASTA

LOC131016395
ATGCTTTTTATCTTTTCTAAAATGTTATTTCCTTTTATTTTCTGTTCTGTTTCTTTTTCAGCTTTTTTTTTTTGTTTCTGTAATCGGTCTCCCTGCAATTTTGCCGACGTGTTCTCCGGCAGATTTTGGCCATCAATCGCACGGAGTACCACCACCGTCAAAACATGTCCTGCAACGATGGGGTTTGCTTTTGCTGCTTATACAACTGATGGGCCTGGGGTTTTTGATTTCAAGCAAGGAAAAGATCGTGTGAGCTTAAG...

Protein

1 records

下载 Protein FASTA

XP_057801076.1
MLFIFSKMLFPFIFCSVSFSAFFFCFCNRSPCNFADVFSGRFWPSIARSTTTVKTCPATMGFAFAAYTTDGPGVFDFKQGKDRVSLRDWLAYVARNANVFTNIIIKNHLNSYRWEGTDMHLLSLMMGAMIGRSCGYPRDI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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