当前解析结果
SmilChr03G002163| 统一新 Gene ID | SmilChr03G002163 |
|---|---|
| 名称 | SmilChr03G002163 |
| 描述 | KH domain-containing protein At2g38610-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 33663530 - 33666010 / - |
| NCBI Gene ID | LOC131016394 |
|---|---|
| GeneID | 131016394 |
| locus_tag | - |
| NCBI Name | LOC131016394 |
| 原始查询 | SmilChr03G002163 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | KH domain-containing protein At2g38610-like |
| 产物 | KH domain-containing protein At2g38610-like |
| Arabidopsis | AT2G38610 (AT2G38610)RNA-binding KH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818443] identity=86; qcov=0.972; evalue=3.13e-102; confidence=high |
| Rice | Os03g0815700 (SPIN1)- identity=77.2; qcov=0.949; evalue=7.29e-91; confidence=high |
| GO | GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0048024 (regulation of mRNA splicing, via spliceosome) |
| KEGG | - |
| Pfam | PF00013 (KH_1); PF22675 (KH-I_KHDC4-BBP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016394 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801075.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057801075.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057801075.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057801075.1 |
| 5 | Nucleoplasm | 核质 | 0.20000 | XP_057801075.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:33663859 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B106,B129,C20,C64,C66 |
Chr3:33663859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B129,C20,C64,C66 |
Chr3:33663908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,B79,B94 |
Chr3:33663939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,C12,D6 |
Chr3:33663947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr3:33663989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:33663994 |
G |
A |
EMS_canonical_SNV | stop_gained | 100 | A14,A16,A18,A19,A20,A22,A23,A25,A5,A6,A7,B10,B101,B102,B103,B104,B107,B109,B113,B114,B117,B119,B12,B121,B124,B127,B128,B130,B131,B134,B136,B137,B138,B15,B16,B18,B25,B26,B29,B3,B37,B40,B41,B44,B45,B48,B5,B50,B54,B55,B6,B60,B61,B62,B63,B69,B70,B73,B79,B8,B80,B81,B84,B85,B86,B95,C10,C15,C2,C22,C25,C26,C27,C31,C34,C37,C38,C40,C43,C46,C47,C49,C50,C55,C57,C60,C61,C67,C69,C70,C71,C73,C75,C79,C84,C9,D11,D4,D8,D9 |
Chr3:33663998 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B34,B4,B99 |
Chr3:33664273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,C58 |
Chr3:33664286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B118 |
Chr3:33664301 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | A10,A19,A5,B100,B102,B111,B119,B139,B31,B35,B38,B39,B48,B64,C24,D5,D6 |
Chr3:33664303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B25,B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801075.1PF22675
KH-I_KHDC4-BBP 31-119 aa
PF00013
KH_1 34-64 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801075.1 |
Pfam | PF22675 |
KH-I_KHDC4-BBP | Domain | 31 | 119 | 1.1e-19 | 70.7 | KHDC4/BBP-like, KH-domain type I |
XP_057801075.1 |
Pfam | PF00013 |
KH_1 | Domain | 34 | 64 | 7.7e-05 | 23.1 | KH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。