当前解析结果
SmilChr03G002170| 统一新 Gene ID | SmilChr03G002170 |
|---|---|
| 名称 | SmilChr03G002170 |
| 描述 | uncharacterized SmilChr03G002170 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 33746205 - 33748495 / - |
| NCBI Gene ID | LOC131016403 |
|---|---|
| GeneID | 131016403 |
| locus_tag | - |
| NCBI Name | LOC131016403 |
| 原始查询 | SmilChr03G002170 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tropomyosin [Source:NCBI gene (formerly Entrezgene);Acc:839884]; symbol=AT1G30050; hit=AT1G30050; species=arabidopsis; confidence=high |
| 产物 | tropomyosin [Source:NCBI gene (formerly Entrezgene);Acc:839884]; symbol=AT1G30050; hit=AT1G30050; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G30050 (AT1G30050)tropomyosin [Source:NCBI gene (formerly Entrezgene);Acc:839884] identity=49.9; qcov=0.954; evalue=7.19e-80; confidence=high |
| Rice | Os05g0315200- identity=52.4; qcov=0.852; evalue=3.97e-78; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016403 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057801084.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057801084.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057801084.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801084.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801084.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:33746459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:33746977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B13,B53,C45,C73 |
Chr3:33747192 |
TCG |
T |
2bp_deletion | frameshift_variant | 2 | B14,C25 |
Chr3:33747192 |
TCG |
T |
2bp_deletion | CDS_variant | 2 | B14,C25 |
Chr3:33747343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr3:33747798 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr3:33747835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:33748227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,D7 |
Chr3:33748283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B17,C39 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。