Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002175`

染色体: Chr03 坐标: 33788937-33794606 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002175`
名称	SmilChr03G002175
描述	ethanolamine-phosphate cytidylyltransferase-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	33788937 - 33794606 / `-`

ID 对照

NCBI Gene ID	`LOC131016407`
GeneID	`131016407`
locus_tag	`-`
NCBI Name	`LOC131016407`
原始查询	`SmilChr03G002175`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ethanolamine-phosphate cytidylyltransferase-like
产物	ethanolamine-phosphate cytidylyltransferase-like
Arabidopsis	`AT2G38670` (PECT1) phosphorylethanolamine cytidylyltransferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:818449] identity=80.5; qcov=0.914; evalue=0; confidence=high
Rice	`Os11g0123400` - identity=71.4; qcov=1.02; evalue=0; confidence=high
GO	GO:0004306 (ethanolamine-phosphate cytidylyltransferase activity); GO:0005737 (cytoplasm); GO:0006646 (phosphatidylethanolamine biosynthetic process)
KEGG	smil00440 (Phosphonate and phosphinate metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01467 (CTP_transf_like)
InterPro	-
eggNOG	-
NR	GeneID:131016407

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057801085.1`
2	Peroxisome	过氧化物酶体	0.40000	`XP_057801085.1`
3	Mitochondrion matrix	线粒体基质	0.20000	`XP_057801085.1`
4	Nucleus	细胞核	0.00000	`XP_057801085.1`
5	Chromosome	染色体	0.00000	`XP_057801085.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:33789519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,C56
`Chr3:33789695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,C17,C30,C6,C75
`Chr3:33793006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B46
`Chr3:33793663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801085.1

420 aa

210

420

CTP_transf_like

PF01467 CTP_transf_like 47-176 aa PF01467 CTP_transf_like 257-387 aa

XP_057801086.1

420 aa

210

420

CTP_transf_like

PF01467 CTP_transf_like 47-176 aa PF01467 CTP_transf_like 257-387 aa

XP_057801087.1

420 aa

210

420

CTP_transf_like

PF01467 CTP_transf_like 47-176 aa PF01467 CTP_transf_like 257-387 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801085.1`	Pfam	`PF01467`	CTP_transf_like	Domain	47	176	8.5e-44	149.7	Cytidylyltransferase-like
`XP_057801085.1`	Pfam	`PF01467`	CTP_transf_like	Domain	257	387	8.5e-44	149.7	Cytidylyltransferase-like
`XP_057801086.1`	Pfam	`PF01467`	CTP_transf_like	Domain	47	176	8.5e-44	149.7	Cytidylyltransferase-like
`XP_057801086.1`	Pfam	`PF01467`	CTP_transf_like	Domain	257	387	8.5e-44	149.7	Cytidylyltransferase-like
`XP_057801087.1`	Pfam	`PF01467`	CTP_transf_like	Domain	47	176	8.5e-44	149.7	Cytidylyltransferase-like
`XP_057801087.1`	Pfam	`PF01467`	CTP_transf_like	Domain	257	387	8.5e-44	149.7	Cytidylyltransferase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057945103.1
ATAGGTATAGATATTCTGTAAATAGATGACAGAAAATCAAATACAGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAGAAATTGAAAAACAGAGAGAGAGAGAGAGGGTAGCAGTCCCCAGCAAGCTGCGGAAGAAAGAAAGCCTAACCTAAGAAAAAGGAAGTAGGCAAAGGCATCCTCCTTCCTTTACACAAATATCCAATTGGAAGGCATTTTGATTGATTGGTTCAGTGACCGACGTAATATAGTTATC...

XM_057945102.1
ATAGGTATAGATATTCTGTAAATAGATGACAGAAAATCAAATACAGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAGAAATTGAAAAACAGAGAGAGAGAGAGAGGGTAGCAGTCCCCAGCAAGCTGCGGAAGAAAGAAAGCCTAACCTAAGAAAAAGGAAGTAGGCAAAGGCATCCTCCTTCCTTTACACAAATATCCAATTGGAAGGCATTTTGATTGATTGGTTCAGTGACCGACGTAATATAGTTATC...

CDS

3 records

下载 CDS FASTA

LOC131016407
ATGGGTTTAGAAGGGGGGAGCAGCCAGCGGATTGCGGCGTCATGGCTGATCGGCGGGCTTGTAATAGGGCTGTCTATGCTGGGTTTCCAACGCTTTGCTTTGCCGCACATTAAGAAGAAGAAGAGGCCAATTAGGGTGTACATGGACGGCTGCTTCGACATGATGCATTACGGCCACTGCAATGCCCTCCGTCAGGCCCGAGCTCTCGGCGACCAATTGGTCGTCGGCGTTGTCAGCGATGCCGAGATTATTGCCAACAA...

Protein

3 records

下载 Protein FASTA

XP_057801085.1
MGLEGGSSQRIAASWLIGGLVIGLSMLGFQRFALPHIKKKKRPIRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLDERMIMVSGVKWVDEIIPDAPYAITEEFMRKLFDEYNIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSTGDSNSHSSLQRQFSNGRSTLQRQFSHGRNNKSEDGVSGSGTRISHFLPTSRRIVQFSNGKGPGPDARIIYIDG...

XP_057801086.1
MGLEGGSSQRIAASWLIGGLVIGLSMLGFQRFALPHIKKKKRPIRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLDERMIMVSGVKWVDEIIPDAPYAITEEFMRKLFDEYNIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSTGDSNSHSSLQRQFSNGRSTLQRQFSHGRNNKSEDGVSGSGTRISHFLPTSRRIVQFSNGKGPGPDARIIYIDG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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