Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002178`

染色体: Chr03 坐标: 33857428-33859654 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002178`
名称	SmilChr03G002178
描述	mannan endo-1,4-beta-mannosidase 6
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	33857428 - 33859654 / `+`

ID 对照

NCBI Gene ID	`LOC131016412`
GeneID	`131016412`
locus_tag	`-`
NCBI Name	`LOC131016412`
原始查询	`SmilChr03G002178`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mannan endo-1,4-beta-mannosidase 6
产物	mannan endo-1%2C4-beta-mannosidase 6
Arabidopsis	`AT5G01930` (MAN6) Glycosyl hydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831699] identity=71; qcov=0.938; evalue=0; confidence=high
Rice	`Os05g0319100` (MAN5) - identity=59.6; qcov=0.945; evalue=5.78e-172; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0071704 (GO:0071704)
KEGG	smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00150 (Cellulase); PF26410 (GH5_mannosidase)
InterPro	-
eggNOG	-
NR	GeneID:131016412

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057801092.1`
2	Secreted	分泌到胞外	0.20000	`XP_057801092.1`
3	Nucleus	细胞核	0.00000	`XP_057801092.1`
4	Chromosome	染色体	0.00000	`XP_057801092.1`
5	Centromere	着丝粒	0.00000	`XP_057801092.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:33857469`	`TGG`	`T`	2bp_deletion	frameshift_variant	68	A1,A11,A15,A21,A3,A4,A7,A9,B106,B108,B109,B11,B112,B117,B118,B129,B132,B133,B14,B15,B19,B21,B23,B24,B27,B36,B44,B5,B51,B53,B57,B63,B64,B66,B7,B75,B76,B77,B80,B82,B83,B89,B93,B94,B99,C10,C11,C12,C13,C18,C19,C21,C24,C26,C29,C35,C36,C49,C53,C61,C63,C69,C72,C74,C78,C83,C87,D2
`Chr3:33857487`	`AT`	`A`	1bp_deletion	frameshift_variant	44	A1,A11,A15,A21,A3,A4,A7,A9,B108,B109,B11,B112,B115,B118,B123,B129,B132,B21,B23,B24,B57,B66,B7,B75,B76,B77,B80,B82,B89,B93,B99,C12,C13,C18,C19,C21,C26,C36,C49,C53,C61,C72,C78,C83
`Chr3:33857497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B137,B16
`Chr3:33858018`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C33
`Chr3:33858018`	`AT`	`A`	1bp_deletion	CDS_variant	1	C33
`Chr3:33858089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:33858511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr3:33858518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr3:33858745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B91,B95,B98,C50
`Chr3:33858876`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:33858910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A6,B31,B52,C25
`Chr3:33858982`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B106

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801092.1

440 aa

220

440

GH5_mannosidase

Cellulase

PF26410 GH5_mannosidase 45-379 aa PF00150 Cellulase 56-353 aa

XP_057801093.1

422 aa

211

422

GH5_mannosidase

Cellulase

PF26410 GH5_mannosidase 27-361 aa PF00150 Cellulase 38-335 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801092.1`	Pfam	`PF26410`	GH5_mannosidase	Domain	45	379	7.2e-52	177.3	GH family 5 beta-mannosidase-like
`XP_057801092.1`	Pfam	`PF00150`	Cellulase	Domain	56	353	2.9e-14	53.9	Cellulase (glycosyl hydrolase family 5)
`XP_057801093.1`	Pfam	`PF26410`	GH5_mannosidase	Domain	27	361	6e-52	177.6	GH family 5 beta-mannosidase-like
`XP_057801093.1`	Pfam	`PF00150`	Cellulase	Domain	38	335	2.6e-14	54.1	Cellulase (glycosyl hydrolase family 5)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945110.1
TAAAATCTTTCCTTGAAGCTCGTCTCTATGTAGTGATAGAATGGCAATGACCTCCGGCAATTTCTTTTGCTCAACTCAAGTTGATATCATGAATAGGATTGATGAAGATTCATGGAGCATGGTGCAGAGGAAGGGGAACCAATTCATGTTGGATGGGCAGCCATTCTATGTGAATGGATTCAACACATACTGGCTGATGATTTTCGCGGTGGACGAGTCGACCCGACCAAAGGTGAGTGCTGTGTTCCAGCAGGCTTCAT...

XM_057945109.1
AGTGATAGAATGGCAATGACCTCCGGCAATTTCTTTTGCTCAACTCAAGTTGATATCATGAATAGTGAGCTTCAATTCTCTCTCTCTCTCTCTCGCTAATAATCTGTGAAAATCACGTATGTAGTGCTTTCACGGTAAGAAACAACCAATATTTAGTCGACAGATTGAAATGATATAATGATGGCAATGACATATATATAGTCTTAGCTTGTATTCAACTCTCAGCATGTTTAGCTTTCTTTTCAGTATTGTTAAACCAT...

CDS

2 records

下载 CDS FASTA

LOC131016412
ATGGCAATGACCTCCGGCAATTTCTTTTGCTCAACTCAAGTTGATATCATGAATAGGATTGATGAAGATTCATGGAGCATGGTGCAGAGGAAGGGGAACCAATTCATGTTGGATGGGCAGCCATTCTATGTGAATGGATTCAACACATACTGGCTGATGATTTTCGCGGTGGACGAGTCGACCCGACCAAAGGTGAGTGCTGTGTTCCAGCAGGCTTCATCTGTGGGGCTTTCAGTGTGCAGGACTTGGGCTTTCAACGA...

LOC131016412
ATGTACATGTTCAAGGCATTGAGTCTCATTTTGCTCCTTCACCATTCAACATGTTTAGCACTCATCTCTAGATATGACATCTCTGAGTTAGAGGATGAGGTTGGTGCAGGGATTGATGAAGATTCATGGAGCATGGTGCAGAGGAAGGGGAACCAATTCATGTTGGATGGGCAGCCATTCTATGTGAATGGATTCAACACATACTGGCTGATGATTTTCGCGGTGGACGAGTCGACCCGACCAAAGGTGAGTGCTGTGTT...

Protein

2 records

下载 Protein FASTA

XP_057801092.1
MYMFKALSLILLLHHSTCLALISRYDISELEDEVGAGIDEDSWSMVQRKGNQFMLDGQPFYVNGFNTYWLMIFAVDESTRPKVSAVFQQASSVGLSVCRTWAFNDGGWRALQKAPNVYDEQVFKGLDFVVSEAKKYKVRLILSLVNNWEAYGGKSQYVKWGKATGLNLTSDDDFYSHPTLRSYYKSHVKTVLNRVNTITNITYKDDPTIFAWELMNEPRCESDPSGDTLQDWIEEMAVYVKSIDPKHLVEIGAEGFYGAS...

XP_057801093.1
MAMTSGNFFCSTQVDIMNRIDEDSWSMVQRKGNQFMLDGQPFYVNGFNTYWLMIFAVDESTRPKVSAVFQQASSVGLSVCRTWAFNDGGWRALQKAPNVYDEQVFKGLDFVVSEAKKYKVRLILSLVNNWEAYGGKSQYVKWGKATGLNLTSDDDFYSHPTLRSYYKSHVKTVLNRVNTITNITYKDDPTIFAWELMNEPRCESDPSGDTLQDWIEEMAVYVKSIDPKHLVEIGAEGFYGASTPNKVRYNPNTYAQQVGT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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