当前解析结果
SmilChr03G002179| 统一新 Gene ID | SmilChr03G002179 |
|---|---|
| 名称 | SmilChr03G002179 |
| 描述 | serine/threonine-protein kinase AtPK2/AtPK19-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 33863274 - 33867278 / - |
| NCBI Gene ID | LOC131016411 |
|---|---|
| GeneID | 131016411 |
| locus_tag | - |
| NCBI Name | LOC131016411 |
| 原始查询 | SmilChr03G002179 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase AtPK2/AtPK19-like |
| 产物 | serine/threonine-protein kinase AtPK2/AtPK19-like |
| Arabidopsis | AT3G08720 (S6K2)serine/threonine protein kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:820019] identity=67.1; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0334000- identity=67.2; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00433 (Pkinase_C); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like); PF17667 (Pkinase_fungal) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016411 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801091.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057801091.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057801091.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801091.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801091.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:33863461 |
G |
GAA |
2bp_insertion | frameshift_variant | 56 | A1,A11,B1,B10,B101,B104,B105,B106,B114,B122,B129,B132,B135,B136,B17,B2,B20,B21,B25,B26,B27,B3,B42,B43,B47,B48,B52,B58,B6,B69,B7,B78,B8,B82,B88,C1,C12,C16,C22,C28,C31,C32,C33,C4,C41,C42,C54,C56,C59,C68,C71,C74,C76,C87,C9,D11 |
Chr3:33863509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr3:33863842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr3:33863853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr3:33863913 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:33864594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:33865374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr3:33865434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,C77 |
Chr3:33865458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B117,B35,C27,D4 |
Chr3:33865728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B117,B35,C27,D4 |
Chr3:33865752 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B54,B86 |
Chr3:33865752 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B54,B86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801091.1PF00069
Pkinase 149-405 aa
PF07714
PK_Tyr_Ser-Thr 150-388 aa
PF03109
ABC1 223-304 aa
PF14531
Kinase-like 246-384 aa
PF17667
Pkinase_fungal 256-328 aa
PF00433
Pkinase_C 428-463 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801091.1 |
Pfam | PF00069 |
Pkinase | Domain | 149 | 405 | 2.9e-76 | 257.1 | Protein kinase domain |
XP_057801091.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 150 | 388 | 4.8e-36 | 125.1 | Protein tyrosine and serine/threonine kinase |
XP_057801091.1 |
Pfam | PF03109 |
ABC1 | Domain | 223 | 304 | 6.6e-07 | 29.5 | ABC1 atypical kinase-like domain |
XP_057801091.1 |
Pfam | PF14531 |
Kinase-like | Family | 246 | 384 | 1.7e-06 | 28.2 | Kinase-like |
XP_057801091.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 256 | 328 | 2.7e-07 | 30.4 | Fungal protein kinase |
XP_057801091.1 |
Pfam | PF00433 |
Pkinase_C | Family | 428 | 463 | 3.4e-05 | 25.2 | Protein kinase C terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。