当前解析结果
SmilChr03G002185| 统一新 Gene ID | SmilChr03G002185 |
|---|---|
| 名称 | SmilChr03G002185 |
| 描述 | uncharacterized SmilChr03G002185 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 34078558 - 34080770 / + |
| NCBI Gene ID | LOC131018688 |
|---|---|
| GeneID | 131018688 |
| locus_tag | - |
| NCBI Name | LOC131018688 |
| 原始查询 | SmilChr03G002185 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00750- identity=36.1; qcov=0.107; evalue=2.06e-06; confidence=weak |
| Rice | Os08g0202300- identity=28.6; qcov=0.484; evalue=4.41e-39; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018688 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803385.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803385.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803385.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803385.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803385.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:34078584 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | B115,B24,B33,B65,C40,D4 |
Chr3:34078586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B38 |
Chr3:34078609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr3:34078620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,C2,C36 |
Chr3:34078635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B54,D10 |
Chr3:34078637 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B38 |
Chr3:34078637 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B38 |
Chr3:34078643 |
TG |
T |
1bp_deletion | frameshift_variant | 6 | B123,B72,B76,C20,C40,C5 |
Chr3:34078646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B115,B24,B33,D4 |
Chr3:34078657 |
C |
T |
EMS_canonical_SNV | stop_gained | 17 | A13,A16,B1,B104,B118,B137,B22,B23,B33,B63,B83,C13,C25,C42,C48,C5,C6 |
Chr3:34078677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C67 |
Chr3:34078705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803385.1PF00078
RVT_1 3-91 aa
PF17919
RT_RNaseH_2 197-295 aa
PF17917
RT_RNaseH 229-324 aa
PF00075
RNase_H 356-468 aa
PF13456
RVT_3 359-478 aa
PF17921
Integrase_H2C2 551-579 aa
PF00665
rve 597-671 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803385.1 |
Pfam | PF00078 |
RVT_1 | Domain | 3 | 91 | 6.9e-17 | 62.7 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803385.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 197 | 295 | 3.6e-15 | 56.5 | RNase H-like domain found in reverse transcriptase |
XP_057803385.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 229 | 324 | 1.7e-14 | 54.5 | RNase H-like domain found in reverse transcriptase |
XP_057803385.1 |
Pfam | PF00075 |
RNase_H | Domain | 356 | 468 | 9.9e-07 | 29.7 | RNase H |
XP_057803385.1 |
Pfam | PF13456 |
RVT_3 | Domain | 359 | 478 | 1e-15 | 58.5 | Reverse transcriptase-like |
XP_057803385.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 551 | 579 | 2.3e-07 | 31.6 | Integrase zinc binding domain |
XP_057803385.1 |
Pfam | PF00665 |
rve | Domain | 597 | 671 | 6.8e-14 | 52.7 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。