当前解析结果
SmilChr03G002188| 统一新 Gene ID | SmilChr03G002188 |
|---|---|
| 名称 | SmilChr03G002188 |
| 描述 | CBL-interacting serine/threonine-protein kinase 14-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 34180898 - 34182773 / + |
| NCBI Gene ID | LOC131016418 |
|---|---|
| GeneID | 131016418 |
| locus_tag | - |
| NCBI Name | LOC131016418 |
| 原始查询 | SmilChr03G002188 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 14-like |
| 产物 | CBL-interacting serine/threonine-protein kinase 14-like |
| Arabidopsis | AT2G30360 (SIP4)SOS3-interacting protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:817586] identity=61.5; qcov=0.963; evalue=4.35e-174; confidence=high |
| Rice | Os01g0206700 (OsCIPK05)- identity=52.7; qcov=0.961; evalue=1.13e-146; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03109 (ABC1); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016418 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057801099.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057801099.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057801099.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057801099.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801099.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:34181366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,B64,C24 |
Chr3:34181407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B77,B99,C26 |
Chr3:34181495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B129,B132,B2,C12 |
Chr3:34181525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,B98 |
Chr3:34181610 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:34181666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,B53 |
Chr3:34181681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,B53 |
Chr3:34181690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,B53 |
Chr3:34181692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,B53 |
Chr3:34181757 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A20,B53,B88,C10,C34,C5,C8,C86,D9 |
Chr3:34181878 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,C10,C46,C8,C86 |
Chr3:34181895 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A20,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801099.1PF00069
Pkinase 33-287 aa
PF07714
PK_Tyr_Ser-Thr 34-283 aa
PF03109
ABC1 104-192 aa
PF14531
Kinase-like 129-275 aa
PF03822
NAF 313-367 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801099.1 |
Pfam | PF00069 |
Pkinase | Domain | 33 | 287 | 1.7e-75 | 254.5 | Protein kinase domain |
XP_057801099.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 34 | 283 | 2.8e-39 | 135.7 | Protein tyrosine and serine/threonine kinase |
XP_057801099.1 |
Pfam | PF03109 |
ABC1 | Domain | 104 | 192 | 9.1e-09 | 35.5 | ABC1 atypical kinase-like domain |
XP_057801099.1 |
Pfam | PF14531 |
Kinase-like | Family | 129 | 275 | 6.4e-08 | 32.9 | Kinase-like |
XP_057801099.1 |
Pfam | PF03822 |
NAF | Domain | 313 | 367 | 4.3e-18 | 65.9 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。