当前解析结果
SmilChr03G002192| 统一新 Gene ID | SmilChr03G002192 |
|---|---|
| 名称 | SmilChr03G002192 |
| 描述 | wound-induced protein 1 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 34433795 - 34434483 / - |
| NCBI Gene ID | LOC131016421 |
|---|---|
| GeneID | 131016421 |
| locus_tag | - |
| NCBI Name | LOC131016421 |
| 原始查询 | SmilChr03G002192 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wound-induced protein 1 |
| 产物 | wound-induced protein 1 |
| Arabidopsis | AT5G01740 (AT5G01740)Nuclear transport factor 2 (NTF2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:831686] identity=47.6; qcov=1.04; evalue=2.98e-44; confidence=medium |
| Rice | Os05g0342100- identity=47.8; qcov=0.879; evalue=8.81e-31; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF07107 (WI12) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016421 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057801101.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057801101.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801101.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801101.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801101.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:34433996 |
GA |
G |
1bp_deletion | frameshift_variant | 45 | A11,A13,A19,A24,A3,A4,B114,B117,B131,B137,B140,B19,B24,B33,B37,B40,B41,B48,B49,B50,B52,B56,B67,B7,B71,B73,B81,B83,B87,B89,C24,C30,C33,C47,C53,C60,C66,C69,C75,C80,C83,C84,C9,D11,D2 |
Chr3:34433998 |
GGA |
G |
2bp_deletion | frameshift_variant | 43 | A11,A13,A19,A24,A3,A4,B114,B117,B131,B137,B140,B24,B33,B37,B40,B41,B48,B49,B50,B67,B7,B71,B73,B81,B86,B87,B89,C24,C30,C31,C33,C47,C53,C60,C66,C69,C75,C80,C83,C84,C9,D11,D2 |
Chr3:34434001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr3:34434005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr3:34434006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr3:34434079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B72,B81,C31,C82 |
Chr3:34434086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr3:34434122 |
CCT |
C |
2bp_deletion | frameshift_variant | 110 | A10,A11,A13,A14,A19,A21,A24,A3,A4,A7,A9,B102,B110,B111,B112,B113,B114,B117,B12,B120,B122,B125,B127,B130,B131,B138,B140,B15,B19,B2,B21,B24,B3,B32,B34,B36,B37,B4,B40,B41,B42,B45,B49,B53,B54,B55,B56,B58,B6,B60,B61,B66,B67,B69,B7,B71,B76,B79,B81,B82,B83,B84,B86,B87,B89,B92,B95,B97,B99,C16,C20,C21,C24,C25,C26,C28,C31,C32,C33,C34,C36,C39,C40,C41,C43,C47,C5,C53,C55,C59,C60,C66,C68,C69,C73,C75,C8,C80,C82,C83,C84,C85,C87,D1,D10,D11,D2,D3,D6,D7 |
Chr3:34434127 |
G |
GAT |
2bp_insertion | frameshift_variant | 30 | A13,A19,A3,A9,B102,B112,B120,B127,B131,B24,B3,B33,B34,B56,B58,B6,B60,B71,B76,B83,B97,C26,C32,C40,C41,C60,C68,C73,C80,D10 |
Chr3:34434132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr3:34434153 |
G |
GC |
1bp_insertion | frameshift_variant | 12 | A9,B120,B131,B24,B34,B58,B6,B60,B71,C57,C68,C70 |
Chr3:34434155 |
GAT |
G |
2bp_deletion | frameshift_variant | 14 | A9,B120,B131,B24,B34,B58,B6,B60,B71,C52,C57,C68,C70,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801101.1PF07107
WI12 59-157 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801101.1 |
Pfam | PF07107 |
WI12 | Domain | 59 | 157 | 9.3e-31 | 106.8 | Wound-induced protein WI12 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。