当前解析结果
SmilChr03G002195| 统一新 Gene ID | SmilChr03G002195 |
|---|---|
| 名称 | SmilChr03G002195 |
| 描述 | short-chain dehydrogenase reductase 2a-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 34574705 - 34575861 / - |
| NCBI Gene ID | LOC131016425 |
|---|---|
| GeneID | 131016425 |
| locus_tag | - |
| NCBI Name | LOC131016425 |
| 原始查询 | SmilChr03G002195 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | short-chain dehydrogenase reductase 2a-like |
| 产物 | short-chain dehydrogenase reductase 2a-like |
| Arabidopsis | AT3G51680 (SDR2)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824331] identity=72.4; qcov=0.923; evalue=8.85e-138; confidence=high |
| Rice | Os03g0299200- identity=63.5; qcov=0.966; evalue=4.23e-120; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016425 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057801102.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.80000 | XP_057801102.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057801102.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801102.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801102.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:34574777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr3:34574811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B53,B62,C4,C46,C78 |
Chr3:34574849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr3:34574862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,C78 |
Chr3:34574919 |
A |
AC |
1bp_insertion | frameshift_variant | 28 | A14,A21,A22,A25,A4,B108,B113,B119,B12,B123,B19,B29,B30,B39,B42,B52,B58,B62,B79,B8,C15,C2,C27,C33,C63,C71,C78,D10 |
Chr3:34574927 |
CT |
* |
1bp_deletion | CDS_variant | 3 | C26,C35,C58 |
Chr3:34574934 |
A |
AC |
1bp_insertion | frameshift_variant | 30 | A21,A22,A25,A4,B108,B113,B119,B12,B123,B19,B29,B30,B39,B42,B52,B58,B62,B79,B8,C15,C2,C27,C33,C62,C63,C65,C71,C78,D10,D4 |
Chr3:34574967 |
GCC |
G |
2bp_deletion | frameshift_variant | 1 | C72 |
Chr3:34574967 |
GCC |
G |
2bp_deletion | CDS_variant | 1 | C72 |
Chr3:34574996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,B49 |
Chr3:34575231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:34575324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801102.1PF00106
adh_short 33-224 aa
PF01370
Epimerase 36-129 aa
PF08659
KR 36-191 aa
PF13561
adh_short_C2 41-290 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801102.1 |
Pfam | PF00106 |
adh_short | Domain | 33 | 224 | 2.4e-51 | 174.7 | short chain dehydrogenase |
XP_057801102.1 |
Pfam | PF01370 |
Epimerase | Family | 36 | 129 | 5.3e-05 | 23.5 | NAD dependent epimerase/dehydratase family |
XP_057801102.1 |
Pfam | PF08659 |
KR | Family | 36 | 191 | 3.6e-11 | 44.0 | KR domain |
XP_057801102.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 41 | 290 | 1.5e-59 | 202.2 | Enoyl-(Acyl carrier protein) reductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。