当前解析结果
SmilChr03G002204| 统一新 Gene ID | SmilChr03G002204 |
|---|---|
| 名称 | SmilChr03G002204 |
| 描述 | uncharacterized SmilChr03G002204 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 34689106 - 34692549 / + |
| NCBI Gene ID | LOC131016430 |
|---|---|
| GeneID | 131016430 |
| locus_tag | - |
| NCBI Name | LOC131016430 |
| 原始查询 | SmilChr03G002204 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Sel1 repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:818426]; symbol=AT2G38450; hit=AT2G38450; species=arabidopsis; confidence=medium |
| 产物 | Sel1 repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:818426]; symbol=AT2G38450; hit=AT2G38450; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G38450 (AT2G38450)Sel1 repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:818426] identity=72.4; qcov=0.654; evalue=1.61e-43; confidence=medium |
| Rice | Os05g0342900- identity=67.7; qcov=0.722; evalue=3.49e-41; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016430 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801105.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057801105.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057801105.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801105.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801105.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:34689237 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B97 |
Chr3:34689237 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B97 |
Chr3:34689250 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B2 |
Chr3:34689269 |
CG |
C |
1bp_deletion | frameshift_variant | 22 | B10,B111,B120,B133,B139,B26,B28,B3,B30,B47,B48,B53,B66,C22,C32,C38,C41,C56,C68,C76,D2,D3 |
Chr3:34689299 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | B63,B81 |
Chr3:34689299 |
T |
TC |
1bp_insertion | CDS_variant | 2 | B63,B81 |
Chr3:34689314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,B31,B52,C25 |
Chr3:34689415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。