当前解析结果
SmilChr03G002223| 统一新 Gene ID | SmilChr03G002223 |
|---|---|
| 名称 | SmilChr03G002223 |
| 描述 | protein NLP6-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 35042421 - 35046348 / - |
| NCBI Gene ID | LOC131016447 |
|---|---|
| GeneID | 131016447 |
| locus_tag | - |
| NCBI Name | LOC131016447 |
| 原始查询 | SmilChr03G002223 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NLP6-like |
| 产物 | protein NLP6-like |
| Arabidopsis | AT1G64530 (AT1G64530)Plant regulator RWP-RK family protein [Source:NCBI gene (formerly Entrezgene);Acc:842761] identity=28.9; qcov=0.499; evalue=3.07e-47; confidence=low |
| Rice | Os01g0236700 (NLP3)- identity=27; qcov=0.503; evalue=1.3e-38; confidence=low |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00564 (PB1); PF02042 (RWP-RK); PF22922 (GAF_NLP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016447 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057801128.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057801128.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057801128.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801128.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801128.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:35042667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B99,C26 |
Chr3:35042675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr3:35042690 |
CT |
C |
1bp_deletion | frameshift_variant | 25 | A14,A16,A20,A23,A25,A5,B121,B124,B130,B131,B138,B15,B26,B36,B45,B47,B63,B80,B81,B84,C33,C37,C46,C73,C84 |
Chr3:35042704 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B68 |
Chr3:35042704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr3:35042746 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:35042769 |
G |
GCA |
2bp_insertion | frameshift_variant | 22 | A14,A16,A20,A23,A25,A5,B128,B130,B131,B138,B26,B45,B47,B63,B80,B81,B84,C33,C37,C46,C73,C84 |
Chr3:35042771 |
AC |
A |
1bp_deletion | frameshift_variant | 3 | B12,B55,C27 |
Chr3:35042771 |
AC |
A |
1bp_deletion | CDS_variant | 3 | B12,B55,C27 |
Chr3:35042776 |
C |
CA |
1bp_insertion | frameshift_variant | 10 | B126,B35,B64,C22,C24,C32,C56,C64,C66,D5 |
Chr3:35042806 |
CA |
C |
1bp_deletion | frameshift_variant | 21 | B113,B118,B123,B125,B127,B138,B24,B37,B46,B51,B59,B91,B95,B98,C15,C45,C50,C60,C82,D4,D6 |
Chr3:35042813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B55,C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801128.1PF22922
GAF_NLP 234-364 aa
PF22922
GAF_NLP 647-806 aa
PF02042
RWP-RK 914-982 aa
PF00564
PB1 999-1077 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801128.1 |
Pfam | PF22922 |
GAF_NLP | Domain | 234 | 364 | 1e-40 | 139.8 | NLP protein GAF domain |
XP_057801128.1 |
Pfam | PF22922 |
GAF_NLP | Domain | 647 | 806 | 1e-40 | 139.8 | NLP protein GAF domain |
XP_057801128.1 |
Pfam | PF02042 |
RWP-RK | Domain | 914 | 982 | 3e-13 | 50.4 | RWP-RK domain |
XP_057801128.1 |
Pfam | PF00564 |
PB1 | Domain | 999 | 1077 | 3.1e-12 | 47.0 | PB1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。