Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002237`

染色体: Chr03 坐标: 35249368-35251441 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002237`
名称	SmilChr03G002237
描述	uncharacterized SmilChr03G002237
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	35249368 - 35251441 / `-`

ID 对照

NCBI Gene ID	`LOC131016458`
GeneID	`131016458`
locus_tag	`-`
NCBI Name	`LOC131016458`
原始查询	`SmilChr03G002237`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:837214]; symbol=AT1G07030; hit=AT1G07030; species=arabidopsis; confidence=high
产物	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:837214]; symbol=AT1G07030; hit=AT1G07030; species=arabidopsis; confidence=high
Arabidopsis	`AT1G07030` (AT1G07030) Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:837214] identity=70.2; qcov=0.98; evalue=3.36e-141; confidence=high
Rice	`Os03g0296800` (MIT) - identity=68.7; qcov=0.977; evalue=1.63e-125; confidence=high
GO	GO:0015093 (ferrous iron transmembrane transporter activity); GO:0031966 (mitochondrial membrane); GO:0048250 (iron import into the mitochondrion)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131016458

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057801136.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057801136.1`
3	Mitochondrion inner membrane	线粒体内膜	0.80000	`XP_057801136.1`
4	Nucleus	细胞核	0.00000	`XP_057801136.1`
5	Chromosome	染色体	0.00000	`XP_057801136.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:35249646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B47,C33
`Chr3:35249675`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:35249797`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:35249939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B36,B47,C33
`Chr3:35250003`	`TC`	`T`	1bp_deletion	frameshift_variant	24	A14,A16,A20,A23,A25,A5,A7,B121,B124,B128,B130,B136,B138,B15,B26,B32,B45,B53,B66,B84,C20,C46,C84,D2
`Chr3:35250006`	`TCC`	`T`	2bp_deletion	frameshift_variant	23	A14,A16,A20,A23,A25,A5,A7,B121,B124,B128,B130,B136,B138,B15,B26,B32,B45,B53,B66,B84,C46,C84,D2
`Chr3:35250009`	`TC`	`T`	1bp_deletion	frameshift_variant	15	A13,A20,B121,B27,B34,B38,B39,B61,B86,B91,C13,C36,C39,C81,D7
`Chr3:35250012`	`TCG`	`T`	2bp_deletion	frameshift_variant	15	A13,A20,B121,B27,B34,B38,B39,B61,B86,B91,C13,C36,C39,C81,D7
`Chr3:35250194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:35250275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801136.1

301 aa

150

301

Mito_carr

PF00153 Mito_carr 14-104 aa PF00153 Mito_carr 109-195 aa PF00153 Mito_carr 209-300 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801136.1`	Pfam	`PF00153`	Mito_carr	Repeat	14	104	1.9e-71	236.6	Mitochondrial carrier protein
`XP_057801136.1`	Pfam	`PF00153`	Mito_carr	Repeat	109	195	1.9e-71	236.6	Mitochondrial carrier protein
`XP_057801136.1`	Pfam	`PF00153`	Mito_carr	Repeat	209	300	1.9e-71	236.6	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945153.1
TCATTTACTTGATGCCAACCACTAATCATCATTACGAGTTTATCACGATTCTATGCTGATATATTTTCTTCTCTGTTTCACTTTTTAATCAACTCTTTCAAATCTGAATATACCACTGATCTACAAGCCCAATCCATCTGCAAAACGGTGCAATATTTCCAAGAATTACGTGAAGAATCATGACTCTGCAGCGATGAGTTCGACTCCATTTTTTGTCGCGTTTTCGAGAAAGGGAAGGGGACCTGATCTTGAAATGAGGA...

CDS

1 records

下载 CDS FASTA

LOC131016458
ATGGTTGATGCCTCCGCCCCGCCACCGGTCCACGACGGCCTTGAGTTCTGGCAATTCATGATCGCGGGCTCCATAGCCGGCTCAGTCGAGCACATGGCCATGTTCCCGGTCGACACTCTCAAAACTAGGATGCAGGCCATCACTTCCGCCACCAAAACCTCCTCCTTAACTCTCCGGCAATCCCTCGGTTCCATTGTGAAATTCGAGGGGCTAGGCGGCCTGTACCGTGGCATCGCAGCAATGGGGCTAGGCGCGGGCCC...

Protein

1 records

下载 Protein FASTA

XP_057801136.1
MVDASAPPPVHDGLEFWQFMIAGSIAGSVEHMAMFPVDTLKTRMQAITSATKTSSLTLRQSLGSIVKFEGLGGLYRGIAAMGLGAGPAHAVYFSVYESCKKILAAGNPNSPIAHAASGVCATVASDAVLTPMDVVKQRLQLKGSPYKGVCDCVKRIMVEEGFGAFYASYRTTVVMNAPFTAVHFATYEAAKRGLMGVSGGGGEEEEEEESLVVHAAAGGVAGALAAAVTTPLDVVKTQLQCQGVCGCDRLSSSSILDVVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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