当前解析结果
SmilChr03G002246| 统一新 Gene ID | SmilChr03G002246 |
|---|---|
| 名称 | SmilChr03G002246 |
| 描述 | ubiquitin-60S ribosomal protein L40-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 35403394 - 35403909 / + |
| NCBI Gene ID | LOC131018708 |
|---|---|
| GeneID | 131018708 |
| locus_tag | - |
| NCBI Name | LOC131018708 |
| 原始查询 | SmilChr03G002246 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ubiquitin-60S ribosomal protein L40-like |
| 产物 | ubiquitin-60S ribosomal protein L40-like |
| Arabidopsis | AT2G36170 (AT2G36170)60S ribosomal protein L40-1 [Source:NCBI gene (formerly Entrezgene);Acc:818189] identity=63.1; qcov=0.713; evalue=2.96e-44; confidence=medium |
| Rice | Os09g0452700- identity=85.2; qcov=0.474; evalue=1.97e-44; confidence=medium |
| GO | GO:0003735 (structural constituent of ribosome); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005840 (ribosome); GO:0006412 (translation); GO:0015935 (small ribosomal subunit); GO:0016567 (protein ubiquitination); GO:0019941 (modification-dependent protein catabolic process); GO:0031386 (protein tag activity); GO:0031625 (ubiquitin protein ligase binding) |
| KEGG | smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00203 (Ribosomal_S19); PF00240 (ubiquitin); PF11976 (Rad60-SLD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018708 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057803403.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057803403.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803403.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803403.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803403.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:35403405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B67,B97,C46,C53 |
Chr3:35403425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B25,B88 |
Chr3:35403445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,C58 |
Chr3:35403477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,D5 |
Chr3:35403497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B94,D4 |
Chr3:35403516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr3:35403517 |
C |
T |
EMS_canonical_SNV | stop_gained | 58 | A11,A15,A18,A3,A4,A7,A9,B10,B108,B109,B11,B111,B112,B118,B120,B130,B131,B139,B21,B24,B26,B28,B3,B30,B47,B57,B58,B6,B7,B75,B76,B80,B82,B89,B93,B98,C13,C14,C19,C21,C22,C31,C32,C33,C36,C38,C4,C41,C49,C53,C56,C68,C71,C72,C76,C78,C83,D3 |
Chr3:35403538 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B94,D10,D11,D4 |
Chr3:35403538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B94,D10,D11,D4 |
Chr3:35403579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr3:35403583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:35403603 |
C |
CAA |
2bp_insertion | frameshift_variant | 9 | B32,B64,B65,B84,C23,C55,C80,C84,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803403.1PF11976
Rad60-SLD 1-71 aa
PF00240
ubiquitin 3-73 aa
PF00203
Ribosomal_S19 81-151 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803403.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 1 | 71 | 5.1e-16 | 59.0 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057803403.1 |
Pfam | PF00240 |
ubiquitin | Domain | 3 | 73 | 7.9e-29 | 99.9 | Ubiquitin family |
XP_057803403.1 |
Pfam | PF00203 |
Ribosomal_S19 | Domain | 81 | 151 | 9.5e-25 | 87.0 | Ribosomal protein S19 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。