Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G002266`

Chromosome: Chr03 Coordinates: 35694486-35694559 Strand: - Biotype: tRNA

Basic Information

Standard Gene ID	`SmilChr03G002266`
Name	TRNAI-UAU
Description	transfer RNA isoleucine (anticodon UAU)
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	35694486 - 35694559 / `-`

ID Mapping

NCBI Gene ID	`TRNAI-UAU-3`
GeneID	`131019339`
locus_tag	`-`
NCBI Name	`TRNAI-UAU`
Original query	`SmilChr03G002266`

Open ID mapping

Functional Annotation

Source	GFF basic annotation
Description	transfer RNA isoleucine (anticodon UAU)
Product	transfer RNA isoleucine (anticodon UAU)
Arabidopsis	`-` -
Rice	`-` -
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131019339

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Subcellular Localization Top 5

Subcellular localization is still building, or no prediction is available for this gene yet.

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EMS Mutant Variants

No curated EMS CDS / LoF variants are available for this gene yet, or the EMS database is still building.

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Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

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cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

rna-TRNAI-UAU-3
GGTCCCGTAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCCGGGACCA

CDS

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Protein

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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JBrowse

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