Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002277`

染色体: Chr03 坐标: 35928546-35932415 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002277`
名称	SmilChr03G002277
描述	receptor-like protein 7
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	35928546 - 35932415 / `-`

ID 对照

NCBI Gene ID	`LOC131016493`
GeneID	`131016493`
locus_tag	`-`
NCBI Name	`LOC131016493`
原始查询	`SmilChr03G002277`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 7
产物	receptor-like protein 7
Arabidopsis	`AT1G47890` (RLP7) receptor like protein 7 [Source:NCBI gene (formerly Entrezgene);Acc:841206] identity=33.3; qcov=0.945; evalue=1.53e-133; confidence=low
Rice	`Os04g0480500` - identity=39.6; qcov=0.951; evalue=0; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131016493

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801177.1`
2	Nucleus	细胞核	0.00000	`XP_057801177.1`
3	Chromosome	染色体	0.00000	`XP_057801177.1`
4	Centromere	着丝粒	0.00000	`XP_057801177.1`
5	Chromatin	染色质	0.00000	`XP_057801177.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:35928904`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B105
`Chr3:35928904`	`CT`	`C`	1bp_deletion	CDS_variant	1	B105
`Chr3:35928934`	`A`	`ACT`	2bp_insertion	frameshift_variant	168	A1,A10,A11,A13,A14,A16,A18,A2,A20,A22,A23,A24,A25,A5,A6,A7,A8,B1,B100,B101,B102,B104,B105,B108,B110,B111,B112,B114,B115,B117,B119,B12,B121,B122,B123,B124,B125,B126,B128,B129,B13,B130,B131,B132,B134,B136,B137,B138,B140,B15,B16,B17,B19,B2,B22,B23,B25,B26,B27,B28,B29,B31,B32,B33,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B48,B5,B50,B52,B53,B55,B57,B59,B60,B61,B63,B64,B65,B69,B70,B72,B73,B74,B77,B78,B80,B83,B84,B86,B88,B9,B90,B91,B92,B99,C1,C11,C12,C13,C15,C16,C18,C2,C20,C23,C25,C26,C27,C28,C3,C32,C34,C35,C36,C37,C38,C39,C4,C45,C46,C47,C48,C5,C50,C51,C54,C55,C58,C59,C61,C63,C64,C65,C66,C67,C68,C69,C71,C73,C75,C78,C79,C80,C81,C83,C84,C85,C86,C87,C9,D1,D10,D11,D3,D5,D6,D7,D8,D9
`Chr3:35928938`	`CTT`	`C`	2bp_deletion	frameshift_variant	166	A1,A10,A11,A13,A14,A16,A18,A2,A20,A22,A23,A24,A25,A5,A6,A7,A8,B1,B100,B101,B102,B104,B105,B108,B110,B111,B112,B114,B115,B117,B119,B12,B121,B122,B123,B124,B125,B126,B128,B129,B13,B130,B131,B132,B136,B137,B138,B140,B15,B16,B17,B19,B2,B22,B23,B25,B26,B27,B28,B29,B31,B32,B33,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B48,B5,B50,B52,B53,B55,B57,B59,B60,B61,B63,B64,B65,B69,B70,B72,B73,B74,B77,B78,B80,B83,B84,B86,B88,B9,B90,B91,B92,B99,C1,C11,C12,C13,C15,C16,C18,C2,C20,C23,C25,C26,C27,C28,C3,C32,C34,C35,C36,C37,C38,C39,C4,C45,C46,C47,C48,C5,C50,C51,C54,C55,C58,C59,C61,C63,C64,C65,C66,C67,C68,C69,C71,C73,C75,C78,C79,C80,C81,C83,C84,C85,C87,C9,D1,D10,D11,D3,D5,D6,D7,D8,D9
`Chr3:35929234`	`C`	`CGG`	2bp_insertion	frameshift_variant	169	A1,A10,A11,A13,A14,A16,A18,A2,A20,A22,A23,A24,A25,A5,A6,A7,A8,B1,B100,B101,B102,B104,B105,B108,B110,B111,B112,B114,B117,B119,B12,B121,B122,B123,B124,B125,B126,B128,B129,B13,B130,B131,B132,B134,B136,B137,B138,B140,B15,B16,B17,B19,B2,B22,B23,B25,B26,B27,B28,B29,B31,B32,B33,B34,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B48,B5,B50,B52,B53,B55,B57,B59,B60,B61,B63,B64,B65,B69,B70,B72,B73,B74,B77,B78,B80,B83,B84,B86,B88,B9,B90,B91,B92,B94,B99,C1,C11,C12,C13,C15,C16,C18,C2,C20,C23,C25,C26,C27,C28,C3,C32,C34,C35,C36,C37,C38,C39,C45,C46,C47,C48,C5,C50,C51,C54,C55,C58,C59,C61,C63,C64,C65,C66,C67,C68,C69,C71,C73,C75,C78,C79,C80,C81,C83,C84,C85,C86,C87,C9,D1,D10,D11,D3,D4,D5,D6,D7,D8,D9
`Chr3:35929241`	`AG`	`A`	1bp_deletion	frameshift_variant	166	A1,A10,A11,A13,A14,A16,A18,A2,A20,A22,A23,A24,A25,A5,A6,A7,A8,B1,B100,B101,B102,B104,B105,B108,B110,B111,B112,B114,B117,B119,B12,B121,B122,B123,B124,B125,B126,B128,B129,B13,B130,B131,B132,B134,B136,B137,B138,B140,B15,B16,B17,B19,B2,B22,B23,B25,B26,B27,B28,B29,B31,B32,B33,B34,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B48,B5,B50,B52,B53,B55,B57,B59,B60,B61,B63,B64,B65,B69,B70,B72,B73,B74,B77,B78,B80,B83,B84,B86,B88,B9,B90,B91,B94,B99,C1,C11,C12,C13,C15,C16,C2,C20,C23,C25,C26,C27,C28,C3,C32,C34,C35,C36,C37,C38,C39,C45,C46,C47,C48,C5,C50,C51,C54,C55,C58,C59,C61,C63,C64,C66,C67,C68,C69,C71,C73,C75,C78,C79,C80,C81,C83,C84,C85,C86,C87,C9,D1,D10,D11,D3,D4,D5,D6,D7,D8,D9
`Chr3:35929286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B68,C62
`Chr3:35929598`	`GCC`	`G`	2bp_deletion	frameshift_variant	13	A18,B102,B114,B132,B46,B48,B6,B63,B77,C16,C34,C66,D1
`Chr3:35929601`	`T`	`TTG`	2bp_insertion	frameshift_variant	13	A18,B102,B114,B132,B46,B48,B6,B63,B77,C16,C34,C66,D1
`Chr3:35929610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B48,B6,C16,C34
`Chr3:35929612`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B48,B6,C16,C34
`Chr3:35929622`	`G`	`GCC`	2bp_insertion	frameshift_variant	1	C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801177.1

1128 aa

564

1128

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 30-71 aa PF13855 LRR_8 209-267 aa PF00560 LRR_1 210-232 aa PF00560 LRR_1 331-352 aa PF13855 LRR_8 377-435 aa PF00560 LRR_1 402-424 aa PF13855 LRR_8 450-511 aa PF00560 LRR_1 451-473 aa PF00560 LRR_1 547-567 aa PF00560 LRR_1 667-686 aa PF13855 LRR_8 690-749 aa PF00560 LRR_1 715-736 aa PF13855 LRR_8 862-917 aa PF13855 LRR_8 882-941 aa PF00560 LRR_1 883-904 aa PF00560 LRR_1 907-928 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801177.1`	Pfam	`PF08263`	LRRNT_2	Family	30	71	3.4e-08	34.4	Leucine rich repeat N-terminal domain
`XP_057801177.1`	Pfam	`PF13855`	LRR_8	Repeat	209	267	3.8e-56	187.4	Leucine rich repeat
`XP_057801177.1`	Pfam	`PF00560`	LRR_1	Repeat	210	232	6.5e-54	168.9	Leucine Rich Repeat
`XP_057801177.1`	Pfam	`PF00560`	LRR_1	Repeat	331	352	6.5e-54	168.9	Leucine Rich Repeat
`XP_057801177.1`	Pfam	`PF13855`	LRR_8	Repeat	377	435	3.8e-56	187.4	Leucine rich repeat
`XP_057801177.1`	Pfam	`PF00560`	LRR_1	Repeat	402	424	6.5e-54	168.9	Leucine Rich Repeat
`XP_057801177.1`	Pfam	`PF13855`	LRR_8	Repeat	450	511	3.8e-56	187.4	Leucine rich repeat
`XP_057801177.1`	Pfam	`PF00560`	LRR_1	Repeat	451	473	6.5e-54	168.9	Leucine Rich Repeat
`XP_057801177.1`	Pfam	`PF00560`	LRR_1	Repeat	547	567	6.5e-54	168.9	Leucine Rich Repeat
`XP_057801177.1`	Pfam	`PF00560`	LRR_1	Repeat	667	686	6.5e-54	168.9	Leucine Rich Repeat
`XP_057801177.1`	Pfam	`PF13855`	LRR_8	Repeat	690	749	3.8e-56	187.4	Leucine rich repeat
`XP_057801177.1`	Pfam	`PF00560`	LRR_1	Repeat	715	736	6.5e-54	168.9	Leucine Rich Repeat
`XP_057801177.1`	Pfam	`PF13855`	LRR_8	Repeat	862	917	3.8e-56	187.4	Leucine rich repeat
`XP_057801177.1`	Pfam	`PF13855`	LRR_8	Repeat	882	941	3.8e-56	187.4	Leucine rich repeat
`XP_057801177.1`	Pfam	`PF00560`	LRR_1	Repeat	883	904	6.5e-54	168.9	Leucine Rich Repeat
`XP_057801177.1`	Pfam	`PF00560`	LRR_1	Repeat	907	928	6.5e-54	168.9	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945194.1
TAATGGAGGGGCCGACATTAAGCGCGTTGAGTAATAGCTATACGATCACACATATAATACACACAAAACACGTAGTTAACCATTTTTTACCTTTAGAAAAGAACAAAGAAACTCCCACGCTGACCATCCTATCTCTTCCTCATACCTTCCTGTCATCCCTTCCTTTTCTCCTTTGCTTCTCTCTCAAACAAGTCTCGGCGACGCCATAACCGAAAATTCTTTGCTTCGATATTTGTCGAAAGGGGTTGTCCATGGATTAT...

CDS

1 records

下载 CDS FASTA

LOC131016493
ATGAGAATTCAACTCTTTCTTCCATGCCTTCTTTTCTTATCCCTGATCCAAATCTTGATTGCTCTTCTTGCTTCTGGCCAATGCACCGACGACCAAAGATCTTCGTTGCTGCAACTGAAGAGCACCCTTGTGTTTGATTCCACTTCTTCTACCAAGCTGGTAAAATGGAACCAAAGTGATGACTGCTGCAGATGGGAAGGAGTCGGTTGTGATGGAGCAGGACGTGTGATCAGTTTGAACCTCGAGAACGAGACGATTTC...

Protein

1 records

下载 Protein FASTA

XP_057801177.1
MRIQLFLPCLLFLSLIQILIALLASGQCTDDQRSSLLQLKSTLVFDSTSSTKLVKWNQSDDCCRWEGVGCDGAGRVISLNLENETISGGIDNSTALFRLQYLEELNLAFNFFNSAQIPRGLQNLTNLANLNLSNAGFGGQVPIEISTLRSLVILDLSTLFGGAKSLKLENPNLQRLVENLPRLRQLYLDNVNISAQRSDWSQALSSSLPNLTTLSLRSCGLSGPLDSSLAGLHSLSILHLGGNNLSTMVPEFMAKFSNLT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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