Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002289`

染色体: Chr03 坐标: 36072782-36076692 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002289`
名称	SmilChr03G002289
描述	protein NLP5-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	36072782 - 36076692 / `-`

ID 对照

NCBI Gene ID	`LOC131016501`
GeneID	`131016501`
locus_tag	`-`
NCBI Name	`LOC131016501`
原始查询	`SmilChr03G002289`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NLP5-like
产物	protein NLP5-like
Arabidopsis	`AT1G64530` (AT1G64530) Plant regulator RWP-RK family protein [Source:NCBI gene (formerly Entrezgene);Acc:842761] identity=29.6; qcov=0.544; evalue=7.97e-53; confidence=low
Rice	`Os01g0236700` (NLP3) - identity=28.6; qcov=0.496; evalue=1.86e-43; confidence=low
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005515 (protein binding)
KEGG	-
Pfam	PF00564 (PB1); PF02042 (RWP-RK); PF22922 (GAF_NLP)
InterPro	-
eggNOG	-
NR	GeneID:131016501

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057801183.1`
2	Nucleus	细胞核	0.60000	`XP_057801186.1`
3	Cytosol	细胞质基质	0.40000	`XP_057801183.1`
4	Chromosome	染色体	0.00000	`XP_057801183.1`
5	Centromere	着丝粒	0.00000	`XP_057801183.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:36073087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B97,C14,C20,C37
`Chr3:36073120`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,B16,C19
`Chr3:36073122`	`GAC`	`G`	2bp_deletion	frameshift_variant	15	A15,B20,B56,B62,B68,B88,B96,C44,C62,C64,C66,C80,C81,C86,D2
`Chr3:36073139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:36073144`	`CT`	`C`	1bp_deletion	frameshift_variant	12	A13,A20,B121,B38,B61,B80,B86,C13,C36,C39,C81,D7
`Chr3:36073199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B55,C27
`Chr3:36073234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr3:36073294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B69,C28,C38,C71
`Chr3:36073527`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:36073555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B126,B53,B66,C64,C66
`Chr3:36073593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,B94
`Chr3:36073645`	`CT`	`C`	1bp_deletion	frameshift_variant	35	A14,A16,A23,A25,A5,A6,B100,B114,B126,B128,B130,B136,B137,B138,B139,B140,B15,B16,B25,B26,B45,B53,B63,B66,B78,B84,B88,C16,C19,C25,C46,C64,C66,C73,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801183.1

1104 aa

552

1104

GAF_NLP

RWP-RK

PB1

PF22922 GAF_NLP 232-389 aa PF22922 GAF_NLP 690-853 aa PF02042 RWP-RK 926-995 aa PF00564 PB1 1027-1103 aa

XP_057801184.1

1103 aa

552

1103

GAF_NLP

RWP-RK

PB1

PF22922 GAF_NLP 235-388 aa PF22922 GAF_NLP 689-852 aa PF02042 RWP-RK 925-994 aa PF00564 PB1 1026-1102 aa

XP_057801185.1

1102 aa

551

1102

GAF_NLP

RWP-RK

PB1

PF22922 GAF_NLP 236-387 aa PF22922 GAF_NLP 688-851 aa PF02042 RWP-RK 924-993 aa PF00564 PB1 1025-1101 aa

XP_057801186.1

1072 aa

536

1072

GAF_NLP

RWP-RK

PB1

PF22922 GAF_NLP 232-389 aa PF22922 GAF_NLP 658-821 aa PF02042 RWP-RK 894-963 aa PF00564 PB1 995-1071 aa

XP_057801188.1

1070 aa

535

1070

GAF_NLP

RWP-RK

PB1

PF22922 GAF_NLP 236-387 aa PF22922 GAF_NLP 656-819 aa PF02042 RWP-RK 892-961 aa PF00564 PB1 993-1069 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801183.1`	Pfam	`PF22922`	GAF_NLP	Domain	232	389	8.3e-45	153.1	NLP protein GAF domain
`XP_057801183.1`	Pfam	`PF22922`	GAF_NLP	Domain	690	853	8.3e-45	153.1	NLP protein GAF domain
`XP_057801183.1`	Pfam	`PF02042`	RWP-RK	Domain	926	995	7.2e-14	52.4	RWP-RK domain
`XP_057801183.1`	Pfam	`PF00564`	PB1	Domain	1027	1103	2.5e-11	44.1	PB1 domain
`XP_057801184.1`	Pfam	`PF22922`	GAF_NLP	Domain	235	388	1.7e-44	152.1	NLP protein GAF domain
`XP_057801184.1`	Pfam	`PF22922`	GAF_NLP	Domain	689	852	1.7e-44	152.1	NLP protein GAF domain
`XP_057801184.1`	Pfam	`PF02042`	RWP-RK	Domain	925	994	7.2e-14	52.4	RWP-RK domain
`XP_057801184.1`	Pfam	`PF00564`	PB1	Domain	1026	1102	2.5e-11	44.1	PB1 domain
`XP_057801185.1`	Pfam	`PF22922`	GAF_NLP	Domain	236	387	2e-44	151.9	NLP protein GAF domain
`XP_057801185.1`	Pfam	`PF22922`	GAF_NLP	Domain	688	851	2e-44	151.9	NLP protein GAF domain
`XP_057801185.1`	Pfam	`PF02042`	RWP-RK	Domain	924	993	7.4e-14	52.4	RWP-RK domain
`XP_057801185.1`	Pfam	`PF00564`	PB1	Domain	1025	1101	2.5e-11	44.1	PB1 domain
`XP_057801186.1`	Pfam	`PF22922`	GAF_NLP	Domain	232	389	5.9e-45	153.6	NLP protein GAF domain
`XP_057801186.1`	Pfam	`PF22922`	GAF_NLP	Domain	658	821	5.9e-45	153.6	NLP protein GAF domain
`XP_057801186.1`	Pfam	`PF02042`	RWP-RK	Domain	894	963	6.8e-14	52.5	RWP-RK domain
`XP_057801186.1`	Pfam	`PF00564`	PB1	Domain	995	1071	2.4e-11	44.2	PB1 domain
`XP_057801188.1`	Pfam	`PF22922`	GAF_NLP	Domain	236	387	1.4e-44	152.4	NLP protein GAF domain
`XP_057801188.1`	Pfam	`PF22922`	GAF_NLP	Domain	656	819	1.4e-44	152.4	NLP protein GAF domain
`XP_057801188.1`	Pfam	`PF02042`	RWP-RK	Domain	892	961	7e-14	52.4	RWP-RK domain
`XP_057801188.1`	Pfam	`PF00564`	PB1	Domain	993	1069	2.4e-11	44.2	PB1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057945201.1
AAGACCACCTTAATTATTATTTTGACTGAAGCACTAATTTTATTAGTTTGCATTATTGATGTTGAAAGAGTAACAATGCAAGTCACCTTCCTCTGCTAGCTAGGGTGTTAGTTATTCCCAAGAAAATACTTTCTCGGCAATTCATCATGTGTGATGGCTTGGGAGAATGAGGAACATGTACGTGTGTTGTCGATCCTAAGAGGAGGAGTGGAATGTCATAACAAATATTCTTCAATATCTGATTTCAAACAGGATTTGGA...

XM_057945200.1
AAGACCACCTTAATTATTATTTTGACTGAAGCACTAATTTTATTAGTTTGCATTATTGATGTTGAAAGAGTAACAATGCAAGTCACCTTCCTCTGCTAGCTAGGGTGTTAGTTATTCCCAAGAAAATACTTTCTCGGCAATTCATCATGTGTGATGGCTTGGGAGAATGAGGAACATGTACGTGTGTTGTCGATCCTAAGAGGAGGAGTGGAATGTCATAACAAATATTCTTCAATATCTGATTTCAAACAGGATTTGGA...

CDS

5 records

下载 CDS FASTA

LOC131016501
ATGGCTTGGGAGAATGAGGAACATGTACGTGTGTTGTCGATCCTAAGAGGAGGAGTGGAATGTCATAACAAATATTCTTCAATATCTGATTTCAAACAGGATTTGGAAGAAGGCGCTTTGGCACATGAGGAATCGAAGATGGGATGGGTTTTGTATGAGAAATTAGACCATCCACAAATCATAACTCTGCTCAACCATGTTGCATCCGCGCACTGTTGGATATATACTAGTTATATGGTGCAGTTTTGGGGAGTAGTAAA...

Protein

5 records

下载 Protein FASTA

XP_057801183.1
MAWENEEHVRVLSILRGGVECHNKYSSISDFKQDLEEGALAHEESKMGWVLYEKLDHPQIITLLNHVASAHCWIYTSYMVQFWGVVKVEGRHHYLSCSHHPFLVYCLTKGECWYRKLSRDHVYVVDVGGGDDEHLGAVGRAYRNKQPESSPDLRLYFTHEFPMRDEAARCGFRSYMAVPLFDSHTYQYYGVLELLHGSYLNWKDPLSILDRALQIAGLRSTHNSISISGSANKMKQQPESEITEVLELAMATVPRLHLAQ...

XP_057801184.1
MAWENEEHVRVLSILRGGVECHNKYSSISDFKQDLEEGALAHEESKMGWVLYEKLDHPQIITLLNHVASAHCWIYTSYMVQFWGVVKVEGRHHYLSCSHHPFLVYCLTKGECWYRKLSRDHVYVVDVGGGDDEHLGAVGRAYRNKQPESSPDLRLYFTHEFPMRDEAARCGFRSYMAVPLFDSHTYQYYGVLELLHGSYLNWKDPLSILDRALQIAGLRSTHNSISISGSANKMQQPESEITEVLELAMATVPRLHLAQV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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