当前解析结果
SmilChr03G002309| 统一新 Gene ID | SmilChr03G002309 |
|---|---|
| 名称 | SmilChr03G002309 |
| 描述 | wall-associated receptor kinase 2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 36329044 - 36331922 / + |
| NCBI Gene ID | LOC131016522 |
|---|---|
| GeneID | 131016522 |
| locus_tag | - |
| NCBI Name | LOC131016522 |
| 原始查询 | SmilChr03G002309 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase 2-like |
| 产物 | wall-associated receptor kinase 2-like |
| Arabidopsis | AT1G21270 (WAK2)wall-associated kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838723] identity=43.8; qcov=0.969; evalue=0; confidence=medium |
| Rice | Os04g0598900 (OsWAK50)- identity=45.9; qcov=0.958; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00008 (EGF); PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016522 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801212.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801212.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801212.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801212.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801212.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:36329442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr3:36329502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr3:36329659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,B75,B9 |
Chr3:36329716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B69,C38,C71 |
Chr3:36329783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr3:36330613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:36330701 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C9 |
Chr3:36330766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B19,C64,C66 |
Chr3:36330784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr3:36330869 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A8,A9,B112,B5,B57,B72,B77,B82,C51 |
Chr3:36330955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C32,C68,C85 |
Chr3:36330979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B45,B48,C10,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801212.1PF13947
GUB_WAK_bind 26-85 aa
PF07645
EGF_CA 288-322 aa
PF00008
EGF 292-321 aa
PF00069
Pkinase 412-678 aa
PF07714
PK_Tyr_Ser-Thr 416-682 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801212.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 26 | 85 | 2.1e-09 | 38.3 | Wall-associated receptor kinase galacturonan-binding |
XP_057801212.1 |
Pfam | PF07645 |
EGF_CA | Domain | 288 | 322 | 1.3e-08 | 35.6 | Calcium-binding EGF domain |
XP_057801212.1 |
Pfam | PF00008 |
EGF | Domain | 292 | 321 | 1.8e-07 | 32.0 | EGF-like domain |
XP_057801212.1 |
Pfam | PF00069 |
Pkinase | Domain | 412 | 678 | 6.3e-49 | 167.4 | Protein kinase domain |
XP_057801212.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 416 | 682 | 4.8e-47 | 161.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。