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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002310

染色体: Chr03 坐标: 36346351-36354579 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002310
名称SmilChr03G002310
描述cleavage stimulating factor 64-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向36346351 - 36354579 / +

ID 对照

NCBI Gene IDLOC131016523
GeneID131016523
locus_tag-
NCBI NameLOC131016523
原始查询SmilChr03G002310

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cleavage stimulating factor 64-like
产物cleavage stimulating factor 64-like
ArabidopsisAT1G71800 (CSTF64)
cleavage stimulating factor 64 [Source:NCBI gene (formerly Entrezgene);Acc:843510]
identity=62.2; qcov=0.881; evalue=3.41e-106; confidence=high
RiceOs11g0176100
-
identity=71.1; qcov=0.721; evalue=2.11e-110; confidence=high
GOGO:0003729 (mRNA binding); GO:0005847 (mRNA cleavage and polyadenylation specificity factor complex); GO:0031124 (mRNA 3'-end processing)
KEGGsmil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage))
PfamPF00076 (RRM_1); PF14304 (CSTF_C); PF14327 (CSTF2_hinge)
InterPro-
eggNOG-
NRGeneID:131016523

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057801213.1
2 Nucleoplasm 核质 1.00000 XP_057801213.1
3 Cytoplasm 细胞质 0.80000 XP_057801217.1
4 Cytosol 细胞质基质 0.80000 XP_057801217.1
5 Nuclear body 核内小体 0.60000 XP_057801213.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:36351616 G A EMS_canonical_SNV CDS_variant 1 B129
Chr3:36351677 G A EMS_canonical_SNV CDS_variant 1 B104
Chr3:36352191 C T EMS_canonical_SNV CDS_variant 2 B58,C31
Chr3:36352560 G A EMS_canonical_SNV CDS_variant 1 B75
Chr3:36352626 G A EMS_canonical_SNV CDS_variant 1 B104
Chr3:36352679 C T EMS_canonical_SNV CDS_variant 4 B69,C28,C38,C71
Chr3:36353593 C T EMS_canonical_SNV CDS_variant 1 C57
Chr3:36353646 TC T 1bp_deletion frameshift_variant 1 B27
Chr3:36353646 TC T 1bp_deletion CDS_variant 1 B27
Chr3:36353734 G A EMS_canonical_SNV CDS_variant 5 A6,B113,B59,B9,B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801213.1
336 aa
N
1
168
336
RRM_1
CSTF2_hinge
CSTF_C
C
PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa PF14304 CSTF_C 303-334 aa
XP_057801214.1
336 aa
N
1
168
336
RRM_1
CSTF2_hinge
CSTF_C
C
PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa PF14304 CSTF_C 303-334 aa
XP_057801215.1
336 aa
N
1
168
336
RRM_1
CSTF2_hinge
CSTF_C
C
PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa PF14304 CSTF_C 303-334 aa
XP_057801216.1
336 aa
N
1
168
336
RRM_1
CSTF2_hinge
CSTF_C
C
PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa PF14304 CSTF_C 303-334 aa
XP_057801217.1
312 aa
N
1
156
312
RRM_1
CSTF2_hinge
C
PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa
XP_057801218.1
312 aa
N
1
156
312
RRM_1
CSTF2_hinge
C
PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa
XP_057801219.1
312 aa
N
1
156
312
RRM_1
CSTF2_hinge
C
PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa
XP_057801220.1
312 aa
N
1
156
312
RRM_1
CSTF2_hinge
C
PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801213.1 Pfam PF00076 RRM_1 Domain 12 82 1e-23 83.7 RNA recognition motif
XP_057801213.1 Pfam PF14327 CSTF2_hinge Family 155 231 4.2e-13 50.3 Hinge domain of cleavage stimulation factor subunit 2
XP_057801213.1 Pfam PF14304 CSTF_C Domain 303 334 1.2e-05 25.6 Transcription termination and cleavage factor C-terminal
XP_057801214.1 Pfam PF00076 RRM_1 Domain 12 82 1e-23 83.7 RNA recognition motif
XP_057801214.1 Pfam PF14327 CSTF2_hinge Family 155 231 4.2e-13 50.3 Hinge domain of cleavage stimulation factor subunit 2
XP_057801214.1 Pfam PF14304 CSTF_C Domain 303 334 1.2e-05 25.6 Transcription termination and cleavage factor C-terminal
XP_057801215.1 Pfam PF00076 RRM_1 Domain 12 82 1e-23 83.7 RNA recognition motif
XP_057801215.1 Pfam PF14327 CSTF2_hinge Family 155 231 4.2e-13 50.3 Hinge domain of cleavage stimulation factor subunit 2
XP_057801215.1 Pfam PF14304 CSTF_C Domain 303 334 1.2e-05 25.6 Transcription termination and cleavage factor C-terminal
XP_057801216.1 Pfam PF00076 RRM_1 Domain 12 82 1e-23 83.7 RNA recognition motif
XP_057801216.1 Pfam PF14327 CSTF2_hinge Family 155 231 4.2e-13 50.3 Hinge domain of cleavage stimulation factor subunit 2
XP_057801216.1 Pfam PF14304 CSTF_C Domain 303 334 1.2e-05 25.6 Transcription termination and cleavage factor C-terminal
XP_057801217.1 Pfam PF00076 RRM_1 Domain 12 82 1e-23 83.7 RNA recognition motif
XP_057801217.1 Pfam PF14327 CSTF2_hinge Family 155 231 3.7e-13 50.4 Hinge domain of cleavage stimulation factor subunit 2
XP_057801218.1 Pfam PF00076 RRM_1 Domain 12 82 1e-23 83.7 RNA recognition motif
XP_057801218.1 Pfam PF14327 CSTF2_hinge Family 155 231 3.7e-13 50.4 Hinge domain of cleavage stimulation factor subunit 2
XP_057801219.1 Pfam PF00076 RRM_1 Domain 12 82 1e-23 83.7 RNA recognition motif
XP_057801219.1 Pfam PF14327 CSTF2_hinge Family 155 231 3.7e-13 50.4 Hinge domain of cleavage stimulation factor subunit 2
XP_057801220.1 Pfam PF00076 RRM_1 Domain 12 82 1e-23 83.7 RNA recognition motif
XP_057801220.1 Pfam PF14327 CSTF2_hinge Family 155 231 3.7e-13 50.4 Hinge domain of cleavage stimulation factor subunit 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057945233.1
AGTAAACATAAAAAATTGGGTTTCTGATTTCTCTTCTCACCACCGTTCGCTCTCTCTCCGCCCTTTTCCTTTTCACTCTCTCTCTGCAGCCGCCGGTCGCTGCCGCCCCCGCCTCCTCCCACAGCAGCAGTGCGCCGCCCAGCCCTCGCCGGCTCGCCCCGCCCACACCTATTCTTTCCCGCGCCCCGCCTCCTCTGGCCTCTGTGCCTCCGTCCGGCGACTCCGCTGCAGCAGCCGTTTCCAACAAAAGGATATATATT...
XM_057945237.1
AGTAAACATAAAAAATTGGGTTTCTGATTTCTCTTCTCACCACCGTTCGCTCTCTCTCCGCCCTTTTCCTTTTCACTCTCTCTCTGCAGCCGCCGGTCGCTGCCGCCCCCGCCTCCTCCCACAGCAGCAGTGCGCCGCCCAGCCCTCGCCGGCTCGCCCCGCCCACACCTATTCTTTCCCGCGCCCCGCCTCCTCTGGCCTCTGTGCCTCCGTCCGGCGACTCCGCTGCAGCAGCCGTTTCCAACAAAAGGATATATATT...

CDS

8 records

下载 CDS FASTA
LOC131016523
ATGGCCGCTAATGCACAATCTCAGCATCGCTGTGTTTTTGTTGGGAACATACCGTATGATGCTACTGAAGAGCAACTCATTCAAATATGCGAGGAGGTTGGCCCGGTTGTTTCCTTCAGATTAGTTACTGATAGAGAAACTGGAAAACCAAAGGGTTATGGGTTCTGTGAGTACAAGGATGAAGAGACAGCTCTGAGTGCTCGTCGTAATCTTCAGGGTTATGAGATAAACGGTCGTCAGCTAAGAGTTGACTTCGCTGA...
LOC131016523
ATGGCCGCTAATGCACAATCTCAGCATCGCTGTGTTTTTGTTGGGAACATACCGTATGATGCTACTGAAGAGCAACTCATTCAAATATGCGAGGAGGTTGGCCCGGTTGTTTCCTTCAGATTAGTTACTGATAGAGAAACTGGAAAACCAAAGGGTTATGGGTTCTGTGAGTACAAGGATGAAGAGACAGCTCTGAGTGCTCGTCGTAATCTTCAGGGTTATGAGATAAACGGTCGTCAGCTAAGAGTTGACTTCGCTGA...

Protein

8 records

下载 Protein FASTA
XP_057801213.1
MAANAQSQHRCVFVGNIPYDATEEQLIQICEEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGGPGVVSNVDAPKQFGGQAVLGHPSLHQPVGDSVATAAASVMAGALGSVQTASIPNQIGLQNSSLLGTDPLTRHLAKMSRIQLTEVLSEFKALATQNKEQARKLLLAIPNLPKAIFQVEIMLGVVSPQMLQMPNIRQALSQPVQPLVQNSQTLSGLPPLP...
XP_057801214.1
MAANAQSQHRCVFVGNIPYDATEEQLIQICEEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGGPGVVSNVDAPKQFGGQAVLGHPSLHQPVGDSVATAAASVMAGALGSVQTASIPNQIGLQNSSLLGTDPLTRHLAKMSRIQLTEVLSEFKALATQNKEQARKLLLAIPNLPKAIFQVEIMLGVVSPQMLQMPNIRQALSQPVQPLVQNSQTLSGLPPLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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