当前解析结果
SmilChr03G002312| 统一新 Gene ID | SmilChr03G002312 |
|---|---|
| 名称 | SmilChr03G002312 |
| 描述 | uncharacterized SmilChr03G002312 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 36378395 - 36379272 / - |
| NCBI Gene ID | LOC131018727 |
|---|---|
| GeneID | 131018727 |
| locus_tag | - |
| NCBI Name | LOC131018727 |
| 原始查询 | SmilChr03G002312 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak |
| 产物 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=40.7; qcov=0.234; evalue=5.91e-07; confidence=weak |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018727 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803419.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803419.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803419.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803419.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803419.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:36378398 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B59,B60,C13,C22 |
Chr3:36378431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B55,C27,D10 |
Chr3:36378444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,C31 |
Chr3:36378462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B53,B66,B97,C20,D2 |
Chr3:36378508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr3:36378541 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B11 |
Chr3:36378541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr3:36378543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,C31 |
Chr3:36378566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B69,C28,C38,C71 |
Chr3:36378568 |
G |
GCT |
2bp_insertion | frameshift_variant | 3 | A15,B131,B16 |
Chr3:36378568 |
G |
GCT |
2bp_insertion | CDS_variant | 3 | A15,B131,B16 |
Chr3:36378572 |
TCC |
T |
2bp_deletion | frameshift_variant | 3 | A15,B131,B16 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。