Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002312

染色体: Chr03 坐标: 36378395-36379272 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002312
名称SmilChr03G002312
描述uncharacterized SmilChr03G002312
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向36378395 - 36379272 / -

ID 对照

NCBI Gene IDLOC131018727
GeneID131018727
locus_tag-
NCBI NameLOC131018727
原始查询SmilChr03G002312

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak
产物aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak
ArabidopsisAT2G06105 (AT2G06105)
aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]
identity=40.7; qcov=0.234; evalue=5.91e-07; confidence=weak
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131018727

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057803419.1
2 Cytosol 细胞质基质 0.80000 XP_057803419.1
3 Nucleus 细胞核 0.40000 XP_057803419.1
4 Chromosome 染色体 0.00000 XP_057803419.1
5 Centromere 着丝粒 0.00000 XP_057803419.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:36378398 C T EMS_canonical_SNV CDS_variant 5 B125,B59,B60,C13,C22
Chr3:36378431 G A EMS_canonical_SNV CDS_variant 4 B12,B55,C27,D10
Chr3:36378444 C T EMS_canonical_SNV CDS_variant 2 B58,C31
Chr3:36378462 C T EMS_canonical_SNV CDS_variant 5 B53,B66,B97,C20,D2
Chr3:36378508 G A EMS_canonical_SNV CDS_variant 1 B107
Chr3:36378541 G A EMS_canonical_SNV stop_gained 1 B11
Chr3:36378541 G A EMS_canonical_SNV CDS_variant 1 B11
Chr3:36378543 C T EMS_canonical_SNV CDS_variant 2 B58,C31
Chr3:36378566 G A EMS_canonical_SNV CDS_variant 4 B69,C28,C38,C71
Chr3:36378568 G GCT 2bp_insertion frameshift_variant 3 A15,B131,B16
Chr3:36378568 G GCT 2bp_insertion CDS_variant 3 A15,B131,B16
Chr3:36378572 TCC T 2bp_deletion frameshift_variant 3 A15,B131,B16

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057947436.1
ATGCCCGAGTATGAGAATGCACCGCCGGTTGTGGAGGAAATAGTTGAGGAGGTCACTGTTGAGGTTTCAGGCAAAAAGAATGATGAGAAGAATAAAGGAGCTTCGCCAACAACTGTGACTATACCATTCCCTCAGCGCCATCAGAAAGAGAGGATGAAAGAGCGGCTCTCTAAGTTTTTAGAGATTTTCAAAAAGAAGTTGGGGGAGTTTGAGACCGTGAGGCTCAATGAAGAATGCAGCGCGATTCGGCAGAGGAAGCT...

CDS

1 records

下载 CDS FASTA
LOC131018727
ATGCCCGAGTATGAGAATGCACCGCCGGTTGTGGAGGAAATAGTTGAGGAGGTCACTGTTGAGGTTTCAGGCAAAAAGAATGATGAGAAGAATAAAGGAGCTTCGCCAACAACTGTGACTATACCATTCCCTCAGCGCCATCAGAAAGAGAGGATGAAAGAGCGGCTCTCTAAGTTTTTAGAGATTTTCAAAAAGAAGTTGGGGGAGTTTGAGACCGTGAGGCTCAATGAAGAATGCAGCGCGATTCGGCAGAGGAAGCT...

Protein

1 records

下载 Protein FASTA
XP_057803419.1
MPEYENAPPVVEEIVEEVTVEVSGKKNDEKNKGASPTTVTIPFPQRHQKERMKERLSKFLEIFKKKLGEFETVRLNEECSAIRQRKLPAKVKDPGSFTLSCIIGGQHFGRSLCDLGASINLMPLSVFQQLAIRELKPTSMRLADGRQDDNKIPLILGYPFLATGRALIDVEKGDLTLRVHDESQTFYVYQACRIHKDEVPKKARDPGKERSMAGKSGAERSWSMHCLYQPP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器