当前解析结果
SmilChr03G002334| 统一新 Gene ID | SmilChr03G002334 |
|---|---|
| 名称 | SmilChr03G002334 |
| 描述 | uncharacterized SmilChr03G002334 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 36817041 - 36819289 / - |
| NCBI Gene ID | LOC131018736 |
|---|---|
| GeneID | 131018736 |
| locus_tag | - |
| NCBI Name | LOC131018736 |
| 原始查询 | SmilChr03G002334 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0307900; species=rice; confidence=low |
| 产物 | hit=Os02g0307900; species=rice; confidence=low |
| Arabidopsis | AT1G51172 (AT1G51172)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:3767434] identity=26.8; qcov=0.396; evalue=1.58e-16; confidence=low |
| Rice | Os02g0307900- identity=28.5; qcov=0.378; evalue=6.61e-20; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018736 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803426.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057803426.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803426.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803426.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803426.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:36817229 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,B85 |
Chr3:36817263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr3:36817308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B136,B64,C19,C5 |
Chr3:36817315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C36 |
Chr3:36817318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr3:36817323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr3:36817325 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,C19,C64 |
Chr3:36817333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,C66 |
Chr3:36817336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr3:36817338 |
CT |
C |
1bp_deletion | frameshift_variant | 50 | A10,A13,A22,A5,A8,B1,B102,B11,B110,B113,B114,B118,B131,B134,B14,B17,B18,B23,B25,B3,B30,B37,B40,B47,B55,B61,B73,B79,B82,B9,B94,C14,C19,C25,C29,C30,C38,C39,C42,C43,C63,C64,C66,C79,C87,C9,D1,D11,D2,D8 |
Chr3:36817346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr3:36817355 |
G |
A |
EMS_canonical_SNV | stop_gained | 71 | A15,A21,A3,A5,A7,A8,A9,B110,B114,B117,B119,B128,B129,B131,B133,B136,B137,B139,B15,B2,B20,B25,B28,B45,B47,B5,B51,B52,B55,B56,B57,B64,B67,B71,B72,B78,B84,B88,B89,B92,C10,C11,C19,C20,C26,C28,C3,C32,C33,C35,C45,C47,C53,C58,C60,C62,C63,C68,C7,C70,C75,C76,C80,C83,C85,C86,C87,D10,D11,D2,D4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。