Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002373`

染色体: Chr03 坐标: 37360066-37361268 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002373`
名称	SmilChr03G002373
描述	uncharacterized SmilChr03G002373
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	37360066 - 37361268 / `+`

ID 对照

NCBI Gene ID	`LOC131016579`
GeneID	`131016579`
locus_tag	`-`
NCBI Name	`LOC131016579`
原始查询	`SmilChr03G002373`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007943]; symbol=AT2G38152; hit=AT2G38152; species=arabidopsis; confidence=high
产物	alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007943]; symbol=AT2G38152; hit=AT2G38152; species=arabidopsis; confidence=high
Arabidopsis	`AT2G38152` (AT2G38152) alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007943] identity=48.5; qcov=0.973; evalue=1.91e-117; confidence=high
Rice	`Os04g0529700` - identity=50; qcov=0.792; evalue=1.02e-92; confidence=high
GO	-
KEGG	smil00601 (Glycosphingolipid biosynthesis - lacto and neolacto series - Salvia miltiorrhiza (redroot sage)); smil00603 (Glycosphingolipid biosynthesis - globo and isoglobo series - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF04488 (Gly_transf_sug); PF04572 (Gb3_synth)
InterPro	-
eggNOG	-
NR	GeneID:131016579

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057801272.1`
2	Nucleus	细胞核	0.00000	`XP_057801272.1`
3	Chromosome	染色体	0.00000	`XP_057801272.1`
4	Centromere	着丝粒	0.00000	`XP_057801272.1`
5	Chromatin	染色质	0.00000	`XP_057801272.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:37360267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B11,C1
`Chr3:37360357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr3:37360407`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B82
`Chr3:37360407`	`TG`	`T`	1bp_deletion	CDS_variant	1	B82
`Chr3:37360555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B33,C23
`Chr3:37360902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,C26,C37
`Chr3:37361043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr3:37361120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,D4
`Chr3:37361244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801272.1

371 aa

186

371

Gly_transf_sug

Gb3_synth

PF04488 Gly_transf_sug 103-224 aa PF04572 Gb3_synth 241-364 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801272.1`	Pfam	`PF04488`	Gly_transf_sug	Family	103	224	3e-22	79.8	Glycosyltransferase sugar-binding region containing DXD motif
`XP_057801272.1`	Pfam	`PF04572`	Gb3_synth	Family	241	364	7e-29	101.3	Alpha 1,4-glycosyltransferase conserved region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945289.1
CCCAACAAAAATTCCCTCAAAAATATCGCAATCCCTTTTTCCATATCTTGAAAATTCATTTTGTGCCATGTTTGAGTCTTTGAGATCCATTCCTGCGAAATCAAACATCTTTTCCACAGTCACTTTTCTACTGATCATCATCGTCATCATCTCTTCAGACAGCATTATATCAAACGTCTCATTAAATTCAGATGTTTTGATGCACGAAAGCAGCGGTGAAGATCGCGATCATGATCATCATCTGTCACGAGTTTTGCACA...

CDS

1 records

下载 CDS FASTA

LOC131016579
ATGTTTGAGTCTTTGAGATCCATTCCTGCGAAATCAAACATCTTTTCCACAGTCACTTTTCTACTGATCATCATCGTCATCATCTCTTCAGACAGCATTATATCAAACGTCTCATTAAATTCAGATGTTTTGATGCACGAAAGCAGCGGTGAAGATCGCGATCATGATCATCATCTGTCACGAGTTTTGCACACAAAATCAGCAGATGGCGAAGGTTTCAATTCCGAGATCACATATTTCTTTAGCAGAAATCGATGTAG...

Protein

1 records

下载 Protein FASTA

XP_057801272.1
MFESLRSIPAKSNIFSTVTFLLIIIVIISSDSIISNVSLNSDVLMHESSGEDRDHDHHLSRVLHTKSADGEGFNSEITYFFSRNRCRVRLFMTWISPADFFGERELFGLESLFKTNPKGCLIILSNTLDSIHGSKLLQPLIEIGFRVRAISLDLSSLFNDTPAEIWFDQIKNGSKNAGEIPLPQNLSNLIRLAALYKYGGVYLDTDFIILKDLSRLRNSIGAQSVDVNGNWTRLNNAILVFDKNHQLVYKFMEEFASTFD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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