当前解析结果
SmilChr03G002376| 统一新 Gene ID | SmilChr03G002376 |
|---|---|
| 名称 | SmilChr03G002376 |
| 描述 | uncharacterized SmilChr03G002376 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 37492807 - 37494294 / - |
| NCBI Gene ID | LOC131018743 |
|---|---|
| GeneID | 131018743 |
| locus_tag | - |
| NCBI Name | LOC131018743 |
| 原始查询 | SmilChr03G002376 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=26; qcov=0.341; evalue=1.56e-18; confidence=low |
| Rice | Os09g0268800- identity=23.7; qcov=0.384; evalue=2.87e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF14111 (DUF4283) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018743 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803432.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057803432.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057803432.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057803432.1 |
| 5 | Nucleus | 细胞核 | 0.20000 | XP_057803432.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:37492813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B126,C31 |
Chr3:37492842 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B118 |
Chr3:37492842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr3:37492848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,B13 |
Chr3:37492857 |
G |
A |
EMS_canonical_SNV | stop_gained | 208 | A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A23,A24,A25,A4,A6,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B107,B108,B109,B11,B110,B112,B114,B115,B117,B118,B119,B12,B120,B121,B123,B124,B126,B127,B129,B13,B130,B131,B133,B134,B135,B136,B137,B139,B140,B15,B16,B17,B19,B2,B20,B22,B23,B24,B25,B28,B3,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B52,B53,B54,B55,B57,B58,B6,B61,B62,B63,B65,B66,B67,B68,B7,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B88,B89,B9,B93,B94,B98,B99,C1,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C22,C23,C24,C25,C26,C27,C28,C3,C30,C31,C32,C33,C36,C37,C39,C40,C42,C43,C44,C45,C46,C47,C48,C5,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C71,C73,C74,C75,C76,C77,C78,C79,C8,C80,C82,C83,C84,C86,C87,C9,D1,D11,D2,D3,D5,D6,D7,D8,D9 |
Chr3:37492884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B30,B84 |
Chr3:37492888 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B71,C62 |
Chr3:37492888 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B71,C62 |
Chr3:37492902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B75,C71,C87 |
Chr3:37492908 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A15,A6,B5,B63 |
Chr3:37492908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,A6,B5,B63 |
Chr3:37492923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B34,C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803432.1PF14111
DUF4283 90-160 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803432.1 |
Pfam | PF14111 |
DUF4283 | Domain | 90 | 160 | 7.2e-07 | 29.6 | Domain of unknown function (DUF4283) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。