当前解析结果
SmilChr03G002380| 统一新 Gene ID | SmilChr03G002380 |
|---|---|
| 名称 | SmilChr03G002380 |
| 描述 | uncharacterized SmilChr03G002380 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 37551558 - 37552934 / + |
| NCBI Gene ID | LOC131018748 |
|---|---|
| GeneID | 131018748 |
| locus_tag | - |
| NCBI Name | LOC131018748 |
| 原始查询 | SmilChr03G002380 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os12g0142900- identity=33.3; qcov=0.223; evalue=1.21e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018748 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803436.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803436.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057803436.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803436.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803436.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:37551560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B51 |
Chr3:37551565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,B8 |
Chr3:37551567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr3:37551588 |
C |
T |
EMS_canonical_SNV | stop_gained | 106 | A13,A15,A16,A18,A20,A21,A25,A3,A4,A5,A9,B1,B10,B100,B102,B104,B107,B109,B11,B110,B113,B117,B119,B12,B121,B125,B126,B127,B128,B129,B131,B136,B14,B140,B16,B18,B25,B26,B27,B28,B3,B31,B34,B4,B41,B42,B43,B44,B45,B5,B51,B54,B55,B61,B62,B71,B72,B73,B78,B82,B85,B86,B89,B9,B90,B92,B95,B98,B99,C10,C14,C15,C17,C20,C21,C22,C25,C27,C29,C3,C34,C36,C37,C4,C43,C47,C48,C49,C51,C56,C62,C65,C67,C69,C7,C70,C73,C77,C78,C79,C83,C85,C86,C87,D1,D4 |
Chr3:37551602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B8,C33 |
Chr3:37551605 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | B35,B7,C69,C85 |
Chr3:37551605 |
GA |
G |
1bp_deletion | CDS_variant | 4 | B35,B7,C69,C85 |
Chr3:37551616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B78,B98,C48,C62 |
Chr3:37551618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,C87 |
Chr3:37551620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C82 |
Chr3:37551644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:37551665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B12,B28 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。