Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002390`

染色体: Chr03 坐标: 37841950-37849352 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002390`
名称	SmilChr03G002390
描述	putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	37841950 - 37849352 / `+`

ID 对照

NCBI Gene ID	`LOC131016587`
GeneID	`131016587`
locus_tag	`-`
NCBI Name	`LOC131016587`
原始查询	`SmilChr03G002390`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
产物	putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
Arabidopsis	`AT5G01230` (AT5G01230) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830268] identity=90.5; qcov=0.965; evalue=0; confidence=high
Rice	`Os06g0704900` - identity=86.1; qcov=1; evalue=0; confidence=high
GO	GO:0002181 (cytoplasmic translation); GO:0005737 (cytoplasm); GO:0008175 (tRNA methyltransferase activity); GO:0030488 (tRNA methylation)
KEGG	-
Pfam	PF01728 (FtsJ)
InterPro	-
eggNOG	-
NR	GeneID:131016587

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057801277.1`
2	Nucleus	细胞核	0.60000	`XP_057801277.1`
3	Cytosol	细胞质基质	0.60000	`XP_057801277.1`
4	Chromosome	染色体	0.00000	`XP_057801277.1`
5	Centromere	着丝粒	0.00000	`XP_057801277.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:37842806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,B19
`Chr3:37843690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:37843694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr3:37843939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr3:37845057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C72,D10
`Chr3:37848035`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,B28,B46,C83,D3
`Chr3:37848361`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C72,D11
`Chr3:37848908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,B51,B59,C15
`Chr3:37848941`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr3:37848975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B33,C23
`Chr3:37848987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B4,B9
`Chr3:37849017`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B118,B24,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801277.1

316 aa

158

316

FtsJ

PF01728 FtsJ 21-209 aa

XP_057801278.1

316 aa

158

316

FtsJ

PF01728 FtsJ 21-209 aa

XP_057801279.1

316 aa

158

316

FtsJ

PF01728 FtsJ 21-209 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801277.1`	Pfam	`PF01728`	FtsJ	Family	21	209	2.5e-52	178.1	FtsJ-like methyltransferase
`XP_057801278.1`	Pfam	`PF01728`	FtsJ	Family	21	209	2.5e-52	178.1	FtsJ-like methyltransferase
`XP_057801279.1`	Pfam	`PF01728`	FtsJ	Family	21	209	2.5e-52	178.1	FtsJ-like methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057945296.1
GTTTAAAACGTTCAAATTTTATTGTGAGGCCCAAATAGTACCTCAAAATCCAAAATAAAATTTAAATGGGCCTTCATAATGAGGCCCAGTTTTCACTTAATATTGGCCTGAAAGAATTGAGCCCATTAGTGATTCGCTGTTTGTATTAGAATAGTAGTCGTTAAGGCTGTTTCGCTCTCCTCTTTCTCATCTCCGTCGCCGGGAATTTCTCGCCGTCGTCGTCAGACTTCGACGCTATACGTGTCTCGACAATTGAAGAC...

XM_057945294.1
TTGAGCCCATTAGTGATTCGCTGTTTGTATTAGAATAGTAGTCGTTAAGGCTGTTTCGCTCTCCTCTTTCTCATCTCCGTCGCCGGGAATTTCTCGCCGTCGTCGTCAGACTTCGACGCTATACGTGTCTCGACAATTGAAGACTTTTATTGAGAAGAAAATCCCAGTTTCAGGAGTAAAGTTTTCATCTTTTGCTTCTGGAAGTTTGGCGGCTGAAAAATAGTTTAACTAAAAGCAATGGGAAAAGCGTCTAGGGATAA...

CDS

3 records

下载 CDS FASTA

LOC131016587
ATGGGAAAAGCGTCTAGGGATAAACGGGATATTTACTATAGGAAAGCCAAAGAGGAAGGATGGCGTGCCCGGAGTGCCTTCAAACTGCTTCAGATTGATGAAGAATTTAACATATTTGAAGGGGTAAAGCGAGTGGTAGATTTATGCGCAGCACCAGGAAGCTGGAGTCAGGTTTTGAGCCGAAAACTTTATCTCCCAGCAAAGCTATCACCTGATTCCAAGGATAGTGATCTACCACTTATTGTGGCAATTGATCTCCA...

Protein

3 records

下载 Protein FASTA

XP_057801277.1
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSKDSDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAETVIRHFDGGKADLVVCDGAPDVTGLHDMDEFVQTQLILAALTIVTHILKIGGKFIAKVFRGKDTSLLYCQLKLFFTEVTFAKPKSSRNSSIEAFVVCENYSPPDGFNHKDLHRLLEKIGSPSGADDLDCSSGWLEGPNKVYIPFLACGDLN...

XP_057801278.1
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSKDSDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAETVIRHFDGGKADLVVCDGAPDVTGLHDMDEFVQTQLILAALTIVTHILKIGGKFIAKVFRGKDTSLLYCQLKLFFTEVTFAKPKSSRNSSIEAFVVCENYSPPDGFNHKDLHRLLEKIGSPSGADDLDCSSGWLEGPNKVYIPFLACGDLN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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