Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002393`

染色体: Chr03 坐标: 37886348-37891336 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002393`
名称	SmilChr03G002393
描述	sulfoquinovosyl transferase SQD2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	37886348 - 37891336 / `+`

ID 对照

NCBI Gene ID	`LOC131016590`
GeneID	`131016590`
locus_tag	`-`
NCBI Name	`LOC131016590`
原始查询	`SmilChr03G002393`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sulfoquinovosyl transferase SQD2
产物	sulfoquinovosyl transferase SQD2
Arabidopsis	`AT5G01220` (SQD2) sulfoquinovosyldiacylglycerol 2 [Source:NCBI gene (formerly Entrezgene);Acc:831888] identity=73.3; qcov=0.893; evalue=0; confidence=high
Rice	`Os07g0100300` (SQD2.1) - identity=79.2; qcov=0.81; evalue=0; confidence=high
GO	GO:0009247 (glycolipid biosynthetic process); GO:0009941 (chloroplast envelope); GO:0046506 (sulfolipid biosynthetic process); GO:0046510 (UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00566 (Sulfoquinovose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00534 (Glycos_transf_1); PF13439 (Glyco_transf_4); PF13524 (Glyco_trans_1_2); PF13579 (Glyco_trans_4_4); PF13692 (Glyco_trans_1_4); PF20706 (GT4-conflict)
InterPro	-
eggNOG	-
NR	GeneID:131016590

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057801281.1`
2	Chloroplast membrane	叶绿体膜	0.60000	`XP_057801281.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057801281.1`
4	Nucleus	细胞核	0.00000	`XP_057801281.1`
5	Chromosome	染色体	0.00000	`XP_057801281.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:37886737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr3:37886798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,D1,D7
`Chr3:37887799`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr3:37887827`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B13,B53,C73
`Chr3:37888549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:37889728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr3:37889899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B4,B9,C1
`Chr3:37890846`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr3:37890892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr3:37890911`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr3:37890984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr3:37891064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801281.1

516 aa

258

516

Glyco_trans_4_4

Glyco_transf_4

Glycos_transf_1

Glyco_trans_1_4

Glyco_trans_1_2

GT4-conflict

PF13579 Glyco_trans_4_4 126-283 aa PF13439 Glyco_transf_4 126-292 aa PF00534 Glycos_transf_1 312-464 aa PF13692 Glyco_trans_1_4 314-451 aa PF13524 Glyco_trans_1_2 331-470 aa PF20706 GT4-conflict 374-477 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801281.1`	Pfam	`PF13579`	Glyco_trans_4_4	Domain	126	283	1e-18	68.9	Glycosyl transferase 4-like domain
`XP_057801281.1`	Pfam	`PF13439`	Glyco_transf_4	Domain	126	292	8.4e-29	101.5	Glycosyltransferase Family 4
`XP_057801281.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	312	464	4.5e-29	101.9	Glycosyl transferases group 1
`XP_057801281.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	314	451	5.7e-28	98.7	Glycosyl transferases group 1
`XP_057801281.1`	Pfam	`PF13524`	Glyco_trans_1_2	Domain	331	470	4.7e-08	33.8	Glycosyl transferase-like
`XP_057801281.1`	Pfam	`PF20706`	GT4-conflict	Family	374	477	2.6e-08	34.0	Family 4 Glycosyltransferase in conflict systems

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945298.1
TTTCAATATTCTCGAAACAACCCCAAAAACCGTTGTATGAAGAAAAACTGCAATCTTCCTAACGCATATACTGCGCACCTTCACAGCATGGAATATCCCTTTGAGATGTCTCACATTCCCCTCCTTCTCTCTCTATCAATTCATCTCTTTCCCTCTCTCAAACACCCACACACGCACTGAAAATATCCAAGCTCACATTTCACTGACTACAAACAACGCAAGATTGCCAAACAACAACAAAAGAATTCCATCCAAGTTTT...

CDS

1 records

下载 CDS FASTA

LOC131016590
ATGCCCACTTCTTCTCTCTCCCCTCCTCCTTTCTCTCTCCCCACTTCCTCATCTTCTTTTTGCTCTTACTCATTCCCACCTACACTCTTCAATTCCCTAGTTTCTAGCTCTTGTGCACCGAGAACAAGAAAGCCCATCGCTCTAAATTGTGTAAAGGCGCGATCTTTGCAGCATAGGAGGCCCAAGAGTAGTGCGGAATTGAGAATTATGAGAGTGAGATCATCTAATAATGCAGGTACCAGCAATGTAACAATCAAGGA...

Protein

1 records

下载 Protein FASTA

XP_057801281.1
MPTSSLSPPPFSLPTSSSSFCSYSFPPTLFNSLVSSSCAPRTRKPIALNCVKARSLQHRRPKSSAELRIMRVRSSNNAGTSNVTIKEHNEGEEDDNSPTSLEQEANSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGLPEEFYGAKLIGSRSFPLPWYRNVPMSLALSPRIISAVARFKPDIIHASSPGIMVFGALLIAKLLSVPIVMSYHTHIPVYIPRYTFSWLVKPMWLVLKFLHRAADLT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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