Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002406`

染色体: Chr03 坐标: 38173463-38186844 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002406`
名称	SmilChr03G002406
描述	uncharacterized SmilChr03G002406
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	38173463 - 38186844 / `-`

ID 对照

NCBI Gene ID	`LOC131018766`
GeneID	`131018766`
locus_tag	`-`
NCBI Name	`LOC131018766`
原始查询	`SmilChr03G002406`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mRNA capping enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:820064]; symbol=AT3G09100; hit=AT3G09100; species=arabidopsis; confidence=high
产物	mRNA capping enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:820064]; symbol=AT3G09100; hit=AT3G09100; species=arabidopsis; confidence=high
Arabidopsis	`AT3G09100` (AT3G09100) mRNA capping enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:820064] identity=64.9; qcov=1.03; evalue=0; confidence=high
Rice	`Os12g0193200` (OsPP128) - identity=58.1; qcov=1.03; evalue=0; confidence=high
GO	GO:0003910 (DNA ligase (ATP) activity); GO:0004484 (mRNA guanylyltransferase activity); GO:0005524 (ATP binding); GO:0006281 (DNA repair); GO:0006310 (DNA recombination); GO:0006370 (7-methylguanosine mRNA capping); GO:0006470 (protein dephosphorylation); GO:0008138 (protein tyrosine/serine/threonine phosphatase activity); GO:0140818 (mRNA 5'-triphosphate monophosphatase activity)
KEGG	-
Pfam	PF00782 (DSPc); PF01331 (mRNA_cap_enzyme); PF03919 (mRNA_cap_C); PF22784 (PTP-SAK); PF22785 (Tc-R-P)
InterPro	-
eggNOG	-
NR	GeneID:131018766

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803453.1`
2	Cytoplasm	细胞质	1.00000	`XP_057803453.1`
3	Chromosome	染色体	0.00000	`XP_057803453.1`
4	Centromere	着丝粒	0.00000	`XP_057803453.1`
5	Chromatin	染色质	0.00000	`XP_057803453.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:38174220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr3:38176184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr3:38181662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803453.1

663 aa

332

663

DSPc

Tc-R-P

PTP-SAK

mRNA_cap_enzyme

mRNA_cap_C

PF00782 DSPc 115-241 aa PF22785 Tc-R-P 116-208 aa PF22784 PTP-SAK 120-207 aa PF01331 mRNA_cap_enzyme 295-537 aa PF03919 mRNA_cap_C 551-634 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803453.1`	Pfam	`PF00782`	DSPc	Domain	115	241	6.5e-19	68.8	Dual specificity phosphatase, catalytic domain
`XP_057803453.1`	Pfam	`PF22785`	Tc-R-P	Domain	116	208	5.7e-09	37.2	Polymorphic toxin system, DSP-PTPase phosphatase
`XP_057803453.1`	Pfam	`PF22784`	PTP-SAK	Domain	120	207	2.9e-07	31.4	Swiss Army Knife protein, DSP-PTPase phosphatase domain
`XP_057803453.1`	Pfam	`PF01331`	mRNA_cap_enzyme	Domain	295	537	1e-83	281.2	mRNA capping enzyme, catalytic domain
`XP_057803453.1`	Pfam	`PF03919`	mRNA_cap_C	Domain	551	634	6.5e-18	66.2	mRNA capping enzyme, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947470.1
AAATCTGTATCAACTCACATCAACGGCCTCCCTGTAAATTCTCACGTATTATTAATATTTCTTTTTGCTTCTACCTGTTCCCTCATGGATTGAATTGCACCATCGTTTGCGATCTTTCTCTCTCTACAACCACGGGCGCTTGTTTCTCTCTCTAGGGGTTTTTGGCGGAGTTGAAGTGCGATTTGATTTTGGGCTGCGATTTTGTAGGGTTTTAGTCGCGTCCGGGAGCTGAGGAGGAGGAGTTCTGCTTGATTAATTTA...

CDS

1 records

下载 CDS FASTA

LOC131018766
ATGATTGCCAGCATGGACTTGAATGCCTCCCCTGAACCAGAAGAGGAAGAGGTTTTCCATGAACAACAGTCAGAAGAAGATAATGTGCAGGAAGAACATATAGAATACAATGAACATGTGGACCATGAGCAGAGTGGTGCCTCACTTGCACGCCGGGTATCATTCTGTCTTATTTTGAACCAGCAGAGACCTAATAGTAGACTTCCTCCAGGTTGGTTAGACTGTCCTGCTTATGGAAATGAGATAGGAGGGTTTTTGAT...

Protein

1 records

下载 Protein FASTA

XP_057803453.1
MIASMDLNASPEPEEEEVFHEQQSEEDNVQEEHIEYNEHVDHEQSGASLARRVSFCLILNQQRPNSRLPPGWLDCPAYGNEIGGFLIPSKVPLGESFNEEILPGKRYSSKQVVHQQRVLNRKIGLVIDLTNSSRYYNVNDWRKEGIKHVKIPCKGRDSVPENEAVNKFVYEVQQFLARQRQPKKHILVHCTHGHNRTGYMIAHYLMRTMPMSVTQAIKIFSDARPPGIYKPDYIDALYSFYHEKKPEMVVCPTTPEWKRS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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