Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002411

染色体: Chr03 坐标: 38313209-38316577 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002411
名称SmilChr03G002411
描述mitochondrial uncoupling protein 1
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向38313209 - 38316577 / -

ID 对照

NCBI Gene IDLOC131016597
GeneID131016597
locus_tag-
NCBI NameLOC131016597
原始查询SmilChr03G002411

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述mitochondrial uncoupling protein 1
产物mitochondrial uncoupling protein 1
ArabidopsisAT3G54110 (PUMP1)
plant uncoupling mitochondrial protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:824578]
identity=83.9; qcov=0.983; evalue=0; confidence=high
RiceOs11g0707800 (OsUCP2)
-
identity=80.3; qcov=0.987; evalue=0; confidence=high
GOGO:0006839 (mitochondrial transport); GO:0017077 (oxidative phosphorylation uncoupler activity); GO:0031966 (mitochondrial membrane); GO:1990542 (mitochondrial transmembrane transport)
KEGG-
PfamPF00153 (Mito_carr)
InterPro-
eggNOG-
NRGeneID:131016597

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057801291.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057801291.1
3 Mitochondrion inner membrane 线粒体内膜 1.00000 XP_057801291.1
4 Nucleus 细胞核 0.00000 XP_057801291.1
5 Chromosome 染色体 0.00000 XP_057801291.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:38313557 G A EMS_canonical_SNV CDS_variant 5 A11,B1,B80,C44,C60
Chr3:38315005 C T EMS_canonical_SNV CDS_variant 3 A22,C63,C67
Chr3:38315309 C T EMS_canonical_SNV CDS_variant 1 A16
Chr3:38315437 C T EMS_canonical_SNV CDS_variant 1 B37
Chr3:38315477 C T EMS_canonical_SNV CDS_variant 1 A6
Chr3:38315562 G A EMS_canonical_SNV CDS_variant 2 B68,D9
Chr3:38315564 C T EMS_canonical_SNV CDS_variant 1 A16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057801291.1
303 aa
N
1
152
303
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 11-107 aa PF00153 Mito_carr 113-207 aa PF00153 Mito_carr 213-298 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801291.1 Pfam PF00153 Mito_carr Repeat 11 107 2.1e-67 223.6 Mitochondrial carrier protein
XP_057801291.1 Pfam PF00153 Mito_carr Repeat 113 207 2.1e-67 223.6 Mitochondrial carrier protein
XP_057801291.1 Pfam PF00153 Mito_carr Repeat 213 298 2.1e-67 223.6 Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057945308.1
GCAAGTGCATCTTAATTATGAGAATAAAATTGGGAAGAAAATGAAGTACTCCGTAGACTAGTAGTGACTAGTGAGTGTAGTTGCATTATTAAAAAAGAAAAAAGAAAAAAGGAAAAAAACAATAAATACGAAGGTGATACCAACTGACAATGGAAGCAGACGCAGCAGACCAAATTGCATTCCCAAATTCCTAATTCGCTGCCTTTTCATCGCTTTTCCCGAGATTCGTCTTTGGCAGTTACGCATCAGGCGCATTTTAG...

CDS

1 records

下载 CDS FASTA
LOC131016597
ATGGCGGATCACGGCAAGGCTAAATCGGACATCTCGTTCGCCGGAACGTTTGCCAGTAGCGCTTTTGCGGCTTGCTTCGCTGAGATTTGTACTATTCCATTAGACACTGCCAAGGTCCGGCTTCAATTGCAAAAGAAAGCTGTGGCAGGGGAGGCTTTGCCGAAATATAAGGGAATGCTAGGAACTGTAGGAACTATTGCAAGAGAAGAAGGGCTAGCTGCACTATGGAAGGGAATTGTGCCTGGACTACATCGTCAGTG...

Protein

1 records

下载 Protein FASTA
XP_057801291.1
MADHGKAKSDISFAGTFASSAFAACFAEICTIPLDTAKVRLQLQKKAVAGEALPKYKGMLGTVGTIAREEGLAALWKGIVPGLHRQCLFGGLRIGLYEPVRNFYVGKDHVGDVPLSKKVLAALTTGAVGIMIANPTDLVKVRLQSEGKLPPGVPRRYSGAISAYSTIVKQEGLTALWTGLGPNVARNAIINAAELASYDQVKETILKIPGFTDNVVTHLFAGLGAGFFAVCIGSPVDVVKSRMMGDSAYKSTLDCFVKTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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