当前解析结果
SmilChr03G002418| 统一新 Gene ID | SmilChr03G002418 |
|---|---|
| 名称 | SmilChr03G002418 |
| 描述 | O-fucosyltransferase 28-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 38418378 - 38421909 / + |
| NCBI Gene ID | LOC131016605 |
|---|---|
| GeneID | 131016605 |
| locus_tag | - |
| NCBI Name | LOC131016605 |
| 原始查询 | SmilChr03G002418 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | O-fucosyltransferase 28-like |
| 产物 | O-fucosyltransferase 28-like |
| Arabidopsis | AT3G54100 (AT3G54100)O-fucosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824577] identity=62.9; qcov=0.889; evalue=0; confidence=high |
| Rice | Os05g0451900 (OsSTA151)- identity=70.7; qcov=0.672; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF10250 (O-FucT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016605 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057801294.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801294.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801294.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801294.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801294.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:38418759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B119,B71 |
Chr3:38418763 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,C34,C67 |
Chr3:38418876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,C34,C37,C63,C67 |
Chr3:38418881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr3:38418882 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:38418907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B13,B53,C73 |
Chr3:38418990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:38418999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr3:38420322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr3:38420340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B118,B123,B24,C72 |
Chr3:38420774 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B119,B71 |
Chr3:38420860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801294.1PF10250
O-FucT 199-513 aa
XP_057801295.1PF10250
O-FucT 199-513 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801294.1 |
Pfam | PF10250 |
O-FucT | Family | 199 | 513 | 7.3e-103 | 345.5 | GDP-fucose protein O-fucosyltransferase |
XP_057801295.1 |
Pfam | PF10250 |
O-FucT | Family | 199 | 513 | 5.4e-103 | 346.0 | GDP-fucose protein O-fucosyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。