当前解析结果
SmilChr03G002434| 统一新 Gene ID | SmilChr03G002434 |
|---|---|
| 名称 | SmilChr03G002434 |
| 描述 | uncharacterized SmilChr03G002434 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 38665392 - 38667889 / - |
| NCBI Gene ID | LOC131018771 |
|---|---|
| GeneID | 131018771 |
| locus_tag | - |
| NCBI Name | LOC131018771 |
| 原始查询 | SmilChr03G002434 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=46.3; qcov=0.07; evalue=5.28e-08; confidence=weak |
| Rice | Os04g0191000- identity=32; qcov=0.93; evalue=1.11e-100; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018771 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803459.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057803459.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057803459.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803459.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803459.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:38665397 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C85 |
Chr3:38665397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr3:38665398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr3:38665486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr3:38665510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B44,C32,C68 |
Chr3:38665529 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | A6 |
Chr3:38665529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr3:38665543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr3:38665562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr3:38665582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B36,B95,B98 |
Chr3:38665656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B94,C64,C66 |
Chr3:38665664 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803459.1PF03732
PEG10_N-capsid 119-193 aa
PF19259
Ty3_capsid 144-281 aa
PF13650
Asp_protease_2 390-476 aa
PF13975
gag-asp_proteas 390-478 aa
PF08284
RVP_2 393-478 aa
PF30863
PRO_PEG10-RTL1 399-488 aa
PF00078
RVT_1 683-755 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803459.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 119 | 193 | 1.4e-10 | 42.1 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057803459.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 144 | 281 | 5.5e-14 | 52.8 | Ty3 transposon capsid-like protein |
XP_057803459.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 390 | 476 | 4.5e-09 | 37.6 | Aspartyl protease |
XP_057803459.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 390 | 478 | 4.9e-08 | 34.2 | gag-polyprotein putative aspartyl protease |
XP_057803459.1 |
Pfam | PF08284 |
RVP_2 | Domain | 393 | 478 | 2.2e-10 | 41.2 | Retroviral aspartyl protease |
XP_057803459.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 399 | 488 | 3.1e-09 | 38.0 | PEG10/RTL1 protease domain |
XP_057803459.1 |
Pfam | PF00078 |
RVT_1 | Domain | 683 | 755 | 2.6e-19 | 70.6 | Reverse transcriptase (RNA-dependent DNA polymerase) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。