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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002474

染色体: Chr03 坐标: 39195515-39200886 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002474
名称SmilChr03G002474
描述ultraviolet-B receptor UVR8-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向39195515 - 39200886 / -

ID 对照

NCBI Gene IDLOC131016646
GeneID131016646
locus_tag-
NCBI NameLOC131016646
原始查询SmilChr03G002474

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ultraviolet-B receptor UVR8-like
产物ultraviolet-B receptor UVR8-like
ArabidopsisAT3G53830 (AT3G53830)
Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:824550]
identity=55.3; qcov=0.889; evalue=6.72e-162; confidence=high
RiceOs05g0456925
-
identity=51.7; qcov=0.938; evalue=6.98e-150; confidence=high
GO-
KEGG-
PfamPF00415 (RCC1); PF13540 (RCC1_2); PF25390 (WD40_RLD)
InterPro-
eggNOG-
NRGeneID:131016646

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057801326.1
2 Cytoplasm 细胞质 0.60000 XP_057801328.1
3 Cytosol 细胞质基质 0.40000 XP_057801328.1
4 Chromosome 染色体 0.00000 XP_057801326.1
5 Centromere 着丝粒 0.00000 XP_057801326.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:39195902 C T EMS_canonical_SNV CDS_variant 5 B112,B14,B72,B94,D1
Chr3:39196083 C T EMS_canonical_SNV CDS_variant 2 B74,C82
Chr3:39196358 G A EMS_canonical_SNV CDS_variant 2 B5,B57
Chr3:39197284 AAG A 2bp_deletion frameshift_variant 1 C87
Chr3:39197284 AAG A 2bp_deletion CDS_variant 1 C87
Chr3:39197344 C T EMS_canonical_SNV CDS_variant 2 B74,C82
Chr3:39197355 C T EMS_canonical_SNV CDS_variant 4 B131,B99,C64,C66
Chr3:39198225 C T EMS_canonical_SNV CDS_variant 3 B104,B106,B82
Chr3:39198365 C T EMS_canonical_SNV CDS_variant 4 B123,C32,C42,C68
Chr3:39198418 G A EMS_canonical_SNV stop_gained 1 B140
Chr3:39198418 G A EMS_canonical_SNV CDS_variant 1 B140
Chr3:39198653 G A EMS_canonical_SNV CDS_variant 1 A3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801326.1
491 aa
N
1
246
491
WD40_RLD
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
C
PF25390 WD40_RLD 215-486 aa PF13540 RCC1_2 231-260 aa PF00415 RCC1 248-324 aa PF13540 RCC1_2 311-340 aa PF00415 RCC1 328-376 aa PF13540 RCC1_2 363-392 aa PF00415 RCC1 379-432 aa PF13540 RCC1_2 423-448 aa PF00415 RCC1 435-484 aa
XP_057801327.1
477 aa
N
1
238
477
WD40_RLD
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
C
PF25390 WD40_RLD 201-472 aa PF13540 RCC1_2 217-246 aa PF00415 RCC1 234-310 aa PF13540 RCC1_2 297-326 aa PF00415 RCC1 314-362 aa PF13540 RCC1_2 349-378 aa PF00415 RCC1 365-418 aa PF13540 RCC1_2 409-434 aa PF00415 RCC1 421-470 aa
XP_057801328.1
470 aa
N
1
235
470
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
C
PF13540 RCC1_2 231-260 aa PF00415 RCC1 248-324 aa PF13540 RCC1_2 311-340 aa PF00415 RCC1 328-376 aa PF13540 RCC1_2 363-392 aa PF00415 RCC1 379-432 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801326.1 Pfam PF25390 WD40_RLD Repeat 215 486 1.7e-68 232.3 RCC1-like domain
XP_057801326.1 Pfam PF13540 RCC1_2 Repeat 231 260 1e-46 156.3 Regulator of chromosome condensation (RCC1) repeat
XP_057801326.1 Pfam PF00415 RCC1 Repeat 248 324 4.2e-52 175.2 Regulator of chromosome condensation (RCC1) repeat
XP_057801326.1 Pfam PF13540 RCC1_2 Repeat 311 340 1e-46 156.3 Regulator of chromosome condensation (RCC1) repeat
XP_057801326.1 Pfam PF00415 RCC1 Repeat 328 376 4.2e-52 175.2 Regulator of chromosome condensation (RCC1) repeat
XP_057801326.1 Pfam PF13540 RCC1_2 Repeat 363 392 1e-46 156.3 Regulator of chromosome condensation (RCC1) repeat
XP_057801326.1 Pfam PF00415 RCC1 Repeat 379 432 4.2e-52 175.2 Regulator of chromosome condensation (RCC1) repeat
XP_057801326.1 Pfam PF13540 RCC1_2 Repeat 423 448 1e-46 156.3 Regulator of chromosome condensation (RCC1) repeat
XP_057801326.1 Pfam PF00415 RCC1 Repeat 435 484 4.2e-52 175.2 Regulator of chromosome condensation (RCC1) repeat
XP_057801327.1 Pfam PF25390 WD40_RLD Repeat 201 472 9.1e-69 233.2 RCC1-like domain
XP_057801327.1 Pfam PF13540 RCC1_2 Repeat 217 246 8.2e-47 156.6 Regulator of chromosome condensation (RCC1) repeat
XP_057801327.1 Pfam PF00415 RCC1 Repeat 234 310 3e-52 175.7 Regulator of chromosome condensation (RCC1) repeat
XP_057801327.1 Pfam PF13540 RCC1_2 Repeat 297 326 8.2e-47 156.6 Regulator of chromosome condensation (RCC1) repeat
XP_057801327.1 Pfam PF00415 RCC1 Repeat 314 362 3e-52 175.7 Regulator of chromosome condensation (RCC1) repeat
XP_057801327.1 Pfam PF13540 RCC1_2 Repeat 349 378 8.2e-47 156.6 Regulator of chromosome condensation (RCC1) repeat
XP_057801327.1 Pfam PF00415 RCC1 Repeat 365 418 3e-52 175.7 Regulator of chromosome condensation (RCC1) repeat
XP_057801327.1 Pfam PF13540 RCC1_2 Repeat 409 434 8.2e-47 156.6 Regulator of chromosome condensation (RCC1) repeat
XP_057801327.1 Pfam PF00415 RCC1 Repeat 421 470 3e-52 175.7 Regulator of chromosome condensation (RCC1) repeat
XP_057801328.1 Pfam PF13540 RCC1_2 Repeat 231 260 3.3e-31 107.0 Regulator of chromosome condensation (RCC1) repeat
XP_057801328.1 Pfam PF00415 RCC1 Repeat 248 324 2.2e-35 121.7 Regulator of chromosome condensation (RCC1) repeat
XP_057801328.1 Pfam PF13540 RCC1_2 Repeat 311 340 3.3e-31 107.0 Regulator of chromosome condensation (RCC1) repeat
XP_057801328.1 Pfam PF00415 RCC1 Repeat 328 376 2.2e-35 121.7 Regulator of chromosome condensation (RCC1) repeat
XP_057801328.1 Pfam PF13540 RCC1_2 Repeat 363 392 3.3e-31 107.0 Regulator of chromosome condensation (RCC1) repeat
XP_057801328.1 Pfam PF00415 RCC1 Repeat 379 432 2.2e-35 121.7 Regulator of chromosome condensation (RCC1) repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XR_009099162.1
ATATTAAACCCCGCCGCTGATTTTACCATTTTACCCCTGTCGTTGCGTTTGATCTGATTAAACAAAACCTTGAAAATCTGTAGCCTCTATCCAGATCGACGTAGAACTTCAATTTCTTCTCTGGATAATATTTGTTGGAAATTTCCGACTTTTTTGGTTTGCTTTTGGCGCTTAGAGCTGAAATTGTTTGAGTGATGAATGGAGGTGAGAGGAAGGAAGATGGAGCCAATGATGATAGTGAGAAGCAGTTAGAGGTGTTA...
XR_009099163.1
TATTAAACCCCGCCGCTGATTTTACCATTTTACCCCTGTCGTTGCGTTTGATCTGATTAAACAAAACCTTGAAAATCTGTAGCCTCTATCCAGATCGACGTAGAACTTCAATTTCTTCTCTGGATAATATTTGTTGGAAATTTCCGACTTTTTTGGTTTGCTTTTGGCGCTTAGAGCTGAAATTGTTTGAGTGATGAATGGAGGTGAGAGGAAGGAAGATGGAGCCAATGATGATAGTGAGAAGCAGTTAGAGGTGTTAA...

CDS

3 records

下载 CDS FASTA
LOC131016646
ATGAATGGAGGTGAGAGGAAGGAAGATGGAGCCAATGATGATAGTGAGAAGCAGTTAGAGGTGTTAATGTGCGGGTATTTTCCGGGGGTGACGGCGCAGAGATCGCCGTTGACTTCTCCGGAGATTGTGCGTTTCCCGGAGGCGGAGGCATCCGGGGATTCTTGGAAGGATGTCTGCGCCGGCGGATGCGGCTTCGGCATGGCGATTTCCGCCTCTGGGAAACTAGTTACTTGGGGTTCATCTGATGACCAAGGCCAGAG...
LOC131016646
ATGAATGGAGGTGAGAGGAAGGAAGATGGAGCCAATGATGATAGTGAGAAGCAGTTAGAGGTGTTAATGTGCGGGTATTTTCCGGGGGTGACGGCGCAGAGATCGCCGTTGACTTCTCCGGAGATTGTGCGTTTCCCGGAGGCGGAGGCATCCGGGGATTCTTGGAAGGATGTCTGCGCCGGCGGATGCGGCTTCGGCATGGCGATTTCCGCCTCTGGGAAACTAGTTACTTGGGGTTCATCTGATGACCAAGGCCAGAG...

Protein

3 records

下载 Protein FASTA
XP_057801326.1
MNGGERKEDGANDDSEKQLEVLMCGYFPGVTAQRSPLTSPEIVRFPEAEASGDSWKDVCAGGCGFGMAISASGKLVTWGSSDDQGQSYFASGKHGEAPEVYPLPTADPILEAAASWAHCVSVTDKGEVYTWGWKECVPSIKITCTWNTLKNSDDQTVTRQNSTVTDQGIPQSHSLNSTTGSVLGPNDKISGDETLKRRKVDPQQDSEASTPADETHSMPPCPVSLDPGVRITSVAAGGRHTLALSDVGQVWGWGYGGEGQ...
XP_057801327.1
MNGGERKEDGANDDSEKQLEVLMCGYFPGVTAQRSPLTSPEIVRFPEAEASGDSWKDVCAGGCGFGMAISASGKLVTWGSSDDQGQSYFASGKHGEAPEVYPLPTADPILEAAASWAHCVSVTDKGEVYTWGWKECVPSIKITCTWNTLKNSDDQTVTRQNSTVTDQVLGPNDKISGDETLKRRKVDPQQDSEASTPADETHSMPPCPVSLDPGVRITSVAAGGRHTLALSDVGQVWGWGYGGEGQLGLGSRIKMVASPH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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