当前解析结果
SmilChr03G002485| 统一新 Gene ID | SmilChr03G002485 |
|---|---|
| 名称 | SmilChr03G002485 |
| 描述 | transcription factor AS1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 39505343 - 39508545 / - |
| NCBI Gene ID | LOC131016654 |
|---|---|
| GeneID | 131016654 |
| locus_tag | - |
| NCBI Name | LOC131016654 |
| 原始查询 | SmilChr03G002485 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor AS1-like |
| 产物 | transcription factor AS1-like |
| Arabidopsis | AT2G37630 (AS1)myb-like HTH transcriptional regulator family protein [Source:NCBI gene (formerly Entrezgene);Acc:818340] identity=62.7; qcov=1.06; evalue=5.94e-148; confidence=high |
| Rice | Os12g0572000 (OsMYB91)- identity=59.6; qcov=0.994; evalue=8.54e-126; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016654 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801338.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057801338.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057801338.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057801338.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057801338.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:39505554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B124,B49,B79 |
Chr3:39505725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr3:39505833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B32,C23,C55,D8 |
Chr3:39505843 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,B9 |
Chr3:39505860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr3:39505908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr3:39505950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B32,C23,C55,D8 |
Chr3:39506026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr3:39506180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:39506204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,B98 |
Chr3:39506205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B110,B94,C25,C37,C5 |
Chr3:39506406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,B52,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801338.1PF00249
Myb_DNA-binding 4-53 aa
PF13921
Myb_DNA-bind_6 7-67 aa
PF00249
Myb_DNA-binding 59-94 aa
PF13921
Myb_DNA-bind_6 63-110 aa
XP_057801339.1PF00249
Myb_DNA-binding 4-53 aa
PF13921
Myb_DNA-bind_6 7-67 aa
PF00249
Myb_DNA-binding 59-94 aa
PF13921
Myb_DNA-bind_6 63-110 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801338.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 4 | 53 | 1.7e-21 | 76.8 | Myb-like DNA-binding domain |
XP_057801338.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 7 | 67 | 8e-20 | 71.5 | Myb-like DNA-binding domain |
XP_057801338.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 59 | 94 | 1.7e-21 | 76.8 | Myb-like DNA-binding domain |
XP_057801338.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 63 | 110 | 8e-20 | 71.5 | Myb-like DNA-binding domain |
XP_057801339.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 4 | 53 | 1.7e-21 | 76.8 | Myb-like DNA-binding domain |
XP_057801339.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 7 | 67 | 8e-20 | 71.5 | Myb-like DNA-binding domain |
XP_057801339.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 59 | 94 | 1.7e-21 | 76.8 | Myb-like DNA-binding domain |
XP_057801339.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 63 | 110 | 8e-20 | 71.5 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。