Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002495`

染色体: Chr03 坐标: 39744117-39747305 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002495`
名称	SmilChr03G002495
描述	scarecrow-like protein 9
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	39744117 - 39747305 / `+`

ID 对照

NCBI Gene ID	`LOC131016663`
GeneID	`131016663`
locus_tag	`-`
NCBI Name	`LOC131016663`
原始查询	`SmilChr03G002495`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	scarecrow-like protein 9
产物	scarecrow-like protein 9
Arabidopsis	`AT2G37650` (AT2G37650) GRAS family transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:818342] identity=51.3; qcov=0.916; evalue=0; confidence=high
Rice	`Os03g0690600` (OsSCL14) - identity=52.4; qcov=0.895; evalue=0; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF03514 (GRAS)
InterPro	-
eggNOG	-
NR	GeneID:131016663

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801350.1`
2	Chromosome	染色体	0.00000	`XP_057801350.1`
3	Centromere	着丝粒	0.00000	`XP_057801350.1`
4	Chromatin	染色质	0.00000	`XP_057801350.1`
5	Telomere	端粒	0.00000	`XP_057801350.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:39744680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr3:39744723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B113,B138,B37
`Chr3:39744779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr3:39744865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr3:39744875`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B69,C38,C71
`Chr3:39745015`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:39745351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B132,B133,B74,C39
`Chr3:39745423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B26,B51,B59,C15
`Chr3:39745435`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:39745756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr3:39745757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B31,C25
`Chr3:39746113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,B28,B46,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801350.1

760 aa

380

760

GRAS

PF03514 GRAS 387-758 aa

XP_057801351.1

760 aa

380

760

GRAS

PF03514 GRAS 387-758 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801350.1`	Pfam	`PF03514`	GRAS	Family	387	758	2.1e-120	402.8	GRAS domain family
`XP_057801351.1`	Pfam	`PF03514`	GRAS	Family	387	758	2.1e-120	402.8	GRAS domain family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945367.1
TCAGCAAACCACCATGTTCTCTTTCCAACTTCCTGCTTCTCCTCTCTCTCTCTCTCTCTCTCAAATAAGCGCACTCACCTATGCACTCCTGTGTTACTTCTCCCTTCCTCAGCAATCACTAGGGTTTGCTTTTTCTGAGTTTTTCGGCTATCACTCCCCGCAAAGATTCAGTCTTTTATTGTTTCCTTGAGCAAATTCAAAACTGTCTGTATTGTTGCTTGAGTACGCATATGAGTAGTTTAGGGAATTTTATTGGATTG...

XM_057945368.1
TCAGCAAACCACCATGTTCTCTTTCCAACTTCCTGCTTCTCCTCTCTCTCTCTCTCTCTCTCAAATAAGCGCACTCACCTATGCACTCCTGTGTTACTTCTCCCTTCCTCAGCAATCACTAGGGTTTGCTTTTTCTGAGTTGGTAGAAGAAGAATGGATCCACGTTTTCATAGAATCTTTAATGGAGTTGGGTTGGGGAATCAATCAATTGCCGGATATGCAAATGGGAGAATTGGGAATGGAGCTCGATTTGGGATTAG...

CDS

2 records

下载 CDS FASTA

LOC131016663
ATGGATCCACGTTTTCATAGAATCTTTAATGGAGTTGGGTTGGGGAATCAATCAATTGCCGGATATGCAAATGGGAGAATTGGGAATGGAGCTCGATTTGGGATTAGTTACCCAGATCCGGAATTAGTGAATGAGCATAGAAATGAGGGTTCCTCATTTCAAGAGCATTGTGTTGGGGGTGTGCATTTGGTCCTAGACCAGCCCTTCTCGAACAGGAACGGGGAGGGGCCCGTTTCCAGCTCGCTTGTGGATATTGACGA...

Protein

2 records

下载 Protein FASTA

XP_057801350.1
MDPRFHRIFNGVGLGNQSIAGYANGRIGNGARFGISYPDPELVNEHRNEGSSFQEHCVGGVHLVLDQPFSNRNGEGPVSSSLVDIDDDCDFSDAVLRYIDQILMEEDMEDKSHMLQESLDLQAKERSFYEVLGKKYPPSPLQESGAVSRECGDDSNPNVSCFNSKTSSSDGSGYLIDIVDPSWMIKTHTDHDASISDRAKSSICSSSNSLNNLFVDGWFSDSPVSPLQVRDIYNESQLVWNFKRGVDEASRFLPAGKNLL...

XP_057801351.1
MDPRFHRIFNGVGLGNQSIAGYANGRIGNGARFGISYPDPELVNEHRNEGSSFQEHCVGGVHLVLDQPFSNRNGEGPVSSSLVDIDDDCDFSDAVLRYIDQILMEEDMEDKSHMLQESLDLQAKERSFYEVLGKKYPPSPLQESGAVSRECGDDSNPNVSCFNSKTSSSDGSGYLIDIVDPSWMIKTHTDHDASISDRAKSSICSSSNSLNNLFVDGWFSDSPVSPLQVRDIYNESQLVWNFKRGVDEASRFLPAGKNLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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