Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002498`

染色体: Chr03 坐标: 39788471-39791725 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002498`
名称	SmilChr03G002498
描述	uncharacterized protein At5g02240
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	39788471 - 39791725 / `-`

ID 对照

NCBI Gene ID	`LOC131016665`
GeneID	`131016665`
locus_tag	`-`
NCBI Name	`LOC131016665`
原始查询	`SmilChr03G002498`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818343]; symbol=AT2G37660; hit=AT2G37660; species=arabidopsis; confidence=high
产物	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818343]; symbol=AT2G37660; hit=AT2G37660; species=arabidopsis; confidence=high
Arabidopsis	`AT2G37660` (AT2G37660) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818343] identity=74.4; qcov=0.974; evalue=1.13e-161; confidence=high
Rice	`Os03g0822200` (OSJNBb0081B07.22) - identity=78.6; qcov=0.843; evalue=5.87e-154; confidence=high
GO	GO:0009507 (chloroplast); GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF05368 (NmrA); PF13460 (NAD_binding_10)
InterPro	-
eggNOG	-
NR	GeneID:131016665

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057801352.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057801352.1`
3	Chloroplast thylakoid	类囊体	0.20000	`XP_057801352.1`
4	Nucleus	细胞核	0.00000	`XP_057801352.1`
5	Chromosome	染色体	0.00000	`XP_057801352.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:39788962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C48,C8
`Chr3:39789982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr3:39790248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr3:39790548`	`GA`	`G`	1bp_deletion	frameshift_variant	26	A15,A3,A7,B105,B122,B123,B130,B140,B15,B22,B3,B32,B45,B52,C12,C17,C22,C45,C50,C56,C78,C80,C82,C83,C87,D11
`Chr3:39790551`	`A`	`AG`	1bp_insertion	frameshift_variant	25	A15,A3,A7,B122,B123,B130,B140,B15,B3,B32,B45,B52,C12,C17,C22,C45,C50,C51,C56,C78,C80,C82,C83,C87,D11
`Chr3:39790613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B15,B32,C36,D11
`Chr3:39790616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B15,B32,C36,D11
`Chr3:39790636`	`CA`	`C`	1bp_deletion	frameshift_variant	4	A15,B15,B32,D11
`Chr3:39790636`	`CA`	`C`	1bp_deletion	CDS_variant	4	A15,B15,B32,D11
`Chr3:39790659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B15,B32,B4,D11
`Chr3:39790668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,B32,B4,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801352.1

305 aa

152

305

NmrA

3Beta_HSD

NAD_binding_10

PF05368 NmrA 56-224 aa PF01073 3Beta_HSD 60-202 aa PF13460 NAD_binding_10 63-269 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801352.1`	Pfam	`PF05368`	NmrA	Family	56	224	1.3e-10	42.1	NmrA-like family
`XP_057801352.1`	Pfam	`PF01073`	3Beta_HSD	Family	60	202	6.2e-06	26.2	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057801352.1`	Pfam	`PF13460`	NAD_binding_10	Domain	63	269	2.3e-34	119.6	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945369.1
GAAAAGAAAAAATGCAGTAGTTGATTCAGATAAGATGACTGTTAAAAACAGATAAGAAAATCAGCAAGGCTGCCGCAATCTACTCCGATTTGCTGGAAGTAAAATTCTGAGTCTCCAATATTCATCACCAGCGGCCGCCGCCGCATGGACAGAAATACGTATTAGTAGAGTTTAGCCGGAGAAGTAGCAGTTATGGCACGTTTCGCAGTCACCTCAGCCGCCACTCATAAATGCTGGAGCTTTAATCCTATCGACAGATT...

CDS

1 records

下载 CDS FASTA

LOC131016665
ATGGCACGTTTCGCAGTCACCTCAGCCGCCACTCATAAATGCTGGAGCTTTAATCCTATCGACAGATTCCCTATTTCTAGAGTTGCTTTTCCCAATTCTTCCGCATTCCGATTTTCCCAGCCGCGAAGAGCGAGAATTTCGGTGGTGGCGATGTCTGGCTCAAGCAAAAGCACTGTTCTTGTTACCGGCGCCGGCGGTAGAACTGGCCAAATTGTTTACAAGAAACTAAAGGAGAGGGTAGACCAGTATACTGCAAGGGG...

Protein

1 records

下载 Protein FASTA

XP_057801352.1
MARFAVTSAATHKCWSFNPIDRFPISRVAFPNSSAFRFSQPRRARISVVAMSGSSKSTVLVTGAGGRTGQIVYKKLKERVDQYTARGLVRTPESKEKIGGEDDVYVGDVDDADSMVPAIQGIDALIILTSAVPKIKPGFDLSQGGRPEFYFEDGAFPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNPNHPLNSIGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGVRELLVGKDDELLETETRTIARADV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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