当前解析结果
SmilChr03G002499| 统一新 Gene ID | SmilChr03G002499 |
|---|---|
| 名称 | SmilChr03G002499 |
| 描述 | uncharacterized SmilChr03G002499 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 39808289 - 39810702 / - |
| NCBI Gene ID | LOC131016666 |
|---|---|
| GeneID | 131016666 |
| locus_tag | - |
| NCBI Name | LOC131016666 |
| 原始查询 | SmilChr03G002499 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831784]; symbol=AT5G02230; hit=AT5G02230; species=arabidopsis; confidence=high |
| 产物 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831784]; symbol=AT5G02230; hit=AT5G02230; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G02230 (AT5G02230)Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831784] identity=66.3; qcov=0.885; evalue=1.02e-130; confidence=high |
| Rice | Os03g0273800- identity=61.5; qcov=0.888; evalue=1.92e-130; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016666 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057801353.1 |
| 2 | Chloroplast | 叶绿体 | 0.80000 | XP_057801354.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057801353.1 |
| 4 | Nucleus | 细胞核 | 0.60000 | XP_057801353.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801353.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:39808521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B69,C38,C71 |
Chr3:39808966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C58,C85 |
Chr3:39809005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C58,C85 |
Chr3:39809006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:39809123 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,B86 |
Chr3:39809879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,C23,C55,D8 |
Chr3:39810411 |
T |
TTA |
2bp_insertion | frameshift_variant | 8 | B100,B105,B26,B51,B59,B94,C15,C67 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。