当前解析结果
SmilChr03G002502| 统一新 Gene ID | SmilChr03G002502 |
|---|---|
| 名称 | SmilChr03G002502 |
| 描述 | UPF0496 protein At4g34320-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 39863721 - 39864215 / + |
| NCBI Gene ID | LOC131018793 |
|---|---|
| GeneID | 131018793 |
| locus_tag | - |
| NCBI Name | LOC131018793 |
| 原始查询 | SmilChr03G002502 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UPF0496 protein At4g34320-like |
| 产物 | UPF0496 protein At4g34320-like |
| Arabidopsis | AT4G34320 (AT4G34320)transmembrane protein, putative (DUF677) [Source:NCBI gene (formerly Entrezgene);Acc:829582] identity=71; qcov=0.902; evalue=3.88e-64; confidence=high |
| Rice | Os03g0199100- identity=58.6; qcov=0.957; evalue=2.72e-58; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF05055 (DUF677); PF05633 (ROH1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018793 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057803485.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057803485.1 |
| 3 | Lipid droplet | 脂滴 | 0.20000 | XP_057803485.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057803485.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803485.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:39863723 |
CA |
C |
1bp_deletion | frameshift_variant | 96 | A11,A14,A15,A16,A23,A25,A5,A7,B10,B100,B106,B11,B115,B117,B118,B119,B120,B121,B124,B125,B126,B130,B131,B136,B138,B15,B16,B17,B18,B25,B32,B33,B34,B35,B36,B40,B48,B54,B56,B58,B6,B60,B63,B67,B68,B69,B7,B73,B80,B84,B86,B89,B95,B96,B97,B98,C10,C11,C16,C2,C21,C22,C24,C29,C37,C38,C39,C40,C41,C42,C43,C44,C46,C47,C48,C50,C51,C52,C53,C57,C65,C67,C68,C69,C70,C71,C72,C73,C8,C84,C87,D1,D11,D2,D4,D8 |
Chr3:39863753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,B9 |
Chr3:39863783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B36,B68,B98,C39 |
Chr3:39863816 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B28,B46,D3 |
Chr3:39863826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B5,B57 |
Chr3:39863837 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr3:39863841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B127,B23,B59,C27 |
Chr3:39863876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B24 |
Chr3:39863894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr3:39863913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr3:39863922 |
C |
CA |
1bp_insertion | frameshift_variant | 11 | A15,A21,B11,B125,B48,B54,B86,B89,C2,C21,C73 |
Chr3:39863957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803485.1PF05055
DUF677 2-147 aa
PF05633
ROH1-like 5-73 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803485.1 |
Pfam | PF05055 |
DUF677 | Family | 2 | 147 | 6.5e-53 | 180.5 | Protein of unknown function (DUF677) |
XP_057803485.1 |
Pfam | PF05633 |
ROH1-like | Family | 5 | 73 | 7e-05 | 22.7 | Protein ROH1-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。