Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002512`

染色体: Chr03 坐标: 39982391-39987145 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002512`
名称	SmilChr03G002512
描述	protein FAR1-RELATED SEQUENCE 5-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	39982391 - 39987145 / `-`

ID 对照

NCBI Gene ID	`LOC131018795`
GeneID	`131018795`
locus_tag	`-`
NCBI Name	`LOC131018795`
原始查询	`SmilChr03G002512`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 5-like
产物	protein FAR1-RELATED SEQUENCE 5-like
Arabidopsis	`AT4G38180` (FRS5) FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=35.9; qcov=0.829; evalue=1.1e-138; confidence=medium
Rice	`Os07g0615900` - identity=43.5; qcov=0.724; evalue=0; confidence=medium
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00872 (Transposase_mut); PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like)
InterPro	-
eggNOG	-
NR	GeneID:131018795

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803488.1`
2	Chromosome	染色体	0.00000	`XP_057803488.1`
3	Centromere	着丝粒	0.00000	`XP_057803488.1`
4	Chromatin	染色质	0.00000	`XP_057803488.1`
5	Telomere	端粒	0.00000	`XP_057803488.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:39982392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:39982439`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B65,C49,D4
`Chr3:39982480`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,C49,C74
`Chr3:39982481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr3:39982488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr3:39982555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr3:39982633`	`T`	`TCC`	2bp_insertion	frameshift_variant	3	B13,B56,B69
`Chr3:39982633`	`T`	`TCC`	2bp_insertion	CDS_variant	3	B13,B56,B69
`Chr3:39982685`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr3:39985055`	`A`	`AC`	1bp_insertion	frameshift_variant	9	A20,B109,B125,B131,B40,B44,B53,C69,C78
`Chr3:39985058`	`G`	`GCA`	2bp_insertion	frameshift_variant	9	A20,B109,B125,B131,B40,B44,B53,C69,C78
`Chr3:39985113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803488.1

802 aa

401

802

FAR1

ZSWIM1-3_RNaseH-like

MULE

Transposase_mut

SWIM

PF03101 FAR1 63-149 aa PF21056 ZSWIM1-3_RNaseH-like 237-354 aa PF10551 MULE 272-366 aa PF00872 Transposase_mut 285-463 aa PF04434 SWIM 559-588 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803488.1`	Pfam	`PF03101`	FAR1	Domain	63	149	6.7e-22	78.7	FAR1 DNA-binding domain
`XP_057803488.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	237	354	1.2e-14	55.1	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057803488.1`	Pfam	`PF10551`	MULE	Domain	272	366	1.3e-29	103.2	MULE transposase domain
`XP_057803488.1`	Pfam	`PF00872`	Transposase_mut	Family	285	463	6.9e-05	22.6	Transposase, Mutator family
`XP_057803488.1`	Pfam	`PF04434`	SWIM	Domain	559	588	4.6e-08	33.1	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947505.1
ATGGAGATTGGTGGTACATCTTCTCGCCGTTTGAGTTTTGAGTCTGCTAATGAAGAACATAATCAACTTCATAGTGATATGATAGATGATGACAGTATGAATCATTTAGTTGACTTGACAAGTATGAACAGTAAGGAAGATACTCCAAAGATTGGTATGAGCTTTGATACTGAAATGGATGACTATGAATTTTATCTAAAGTATTCAAAACGTGTGGGCTTTGGTGTTAGAAGAAGCAAAAGTCACAAGAACAAATATGG...

CDS

1 records

下载 CDS FASTA

LOC131018795
ATGGAGATTGGTGGTACATCTTCTCGCCGTTTGAGTTTTGAGTCTGCTAATGAAGAACATAATCAACTTCATAGTGATATGATAGATGATGACAGTATGAATCATTTAGTTGACTTGACAAGTATGAACAGTAAGGAAGATACTCCAAAGATTGGTATGAGCTTTGATACTGAAATGGATGACTATGAATTTTATCTAAAGTATTCAAAACGTGTGGGCTTTGGTGTTAGAAGAAGCAAAAGTCACAAGAACAAATATGG...

Protein

1 records

下载 Protein FASTA

XP_057803488.1
MEIGGTSSRRLSFESANEEHNQLHSDMIDDDSMNHLVDLTSMNSKEDTPKIGMSFDTEMDDYEFYLKYSKRVGFGVRRSKSHKNKYGELVDRIFCCSAQGKRSQDKRDIYVKKARPETRFDCQAKLKVSSRESGKLCVVEFVEEHNHYLSSPNKIHLHRIHRKIAPVAALQIQMANDMGITPKASHDLMARQVGGRENLGFIPEDYKNYLRSKRTRDSRIGDTGGVLEYLQKMQFDDPNFFYAIQVDEDDLITNIFWSDA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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