当前解析结果
SmilChr03G002520| 统一新 Gene ID | SmilChr03G002520 |
|---|---|
| 名称 | SmilChr03G002520 |
| 描述 | RING-H2 finger protein ATL33-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 40175528 - 40176392 / - |
| NCBI Gene ID | LOC131016684 |
|---|---|
| GeneID | 131016684 |
| locus_tag | - |
| NCBI Name | LOC131016684 |
| 原始查询 | SmilChr03G002520 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING-H2 finger protein ATL33-like |
| 产物 | RING-H2 finger protein ATL33-like |
| Arabidopsis | AT2G37580 (AT2G37580)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818334] identity=29.5; qcov=1.12; evalue=3.44e-21; confidence=low |
| Rice | Os12g0432600- identity=43.9; qcov=0.5; evalue=7.1e-16; confidence=low |
| GO | GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016684 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801372.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801372.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801372.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801372.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801372.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:40175743 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr3:40175777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,B66,D2 |
Chr3:40175803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr3:40175819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr3:40175893 |
G |
A |
EMS_canonical_SNV | stop_gained | 59 | A1,A20,A21,A24,A25,B105,B109,B110,B112,B113,B14,B140,B15,B17,B19,B27,B31,B38,B39,B42,B43,B45,B51,B54,B61,B65,B66,B72,B77,B83,B86,B87,B89,B90,B91,B92,B94,B99,C11,C17,C18,C2,C21,C29,C35,C48,C59,C60,C61,C62,C63,C69,C7,C70,C79,C87,C9,D1,D7 |
Chr3:40175912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr3:40175913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C14,C20,C42 |
Chr3:40175941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr3:40176031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:40176043 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C71 |
Chr3:40176043 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C71 |
Chr3:40176048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801372.1PF12678
zf-rbx1 94-137 aa
PF17123
zf-RING_11 95-123 aa
PF00097
zf-C3HC4 95-136 aa
PF13923
zf-C3HC4_2 95-136 aa
PF13639
zf-RING_2 95-137 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801372.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 94 | 137 | 1.8e-08 | 35.2 | RING-H2 zinc finger domain |
XP_057801372.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 95 | 123 | 3.7e-07 | 30.4 | RING-like zinc finger |
XP_057801372.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 95 | 136 | 2.1e-06 | 28.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057801372.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 95 | 136 | 1.4e-08 | 35.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057801372.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 95 | 137 | 1.5e-12 | 48.2 | Ring finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。