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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr03G002527

Chromosome: Chr03 Coordinates: 40310729-40315118 Strand: + Biotype: protein_coding

Basic Information

Standard Gene IDSmilChr03G002527
NameSmilChr03G002527
Descriptionuncharacterized SmilChr03G002527
Chromosome / SeqIDChr03 / NC_080389.1
Coordinates and Strand40310729 - 40315118 / +

ID Mapping

NCBI Gene IDLOC131016689
GeneID131016689
locus_tag-
NCBI NameLOC131016689
Original querySmilChr03G002527

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Functional Annotation

SourceGFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
DescriptionP-hydroxybenzoic acid efflux pump subunit [Source:NCBI gene (formerly Entrezgene);Acc:817427]; symbol=AT2G28780; hit=AT2G28780; species=arabidopsis; confidence=low
ProductP-hydroxybenzoic acid efflux pump subunit [Source:NCBI gene (formerly Entrezgene);Acc:817427]; symbol=AT2G28780; hit=AT2G28780; species=arabidopsis; confidence=low
ArabidopsisAT2G28780 (AT2G28780)
P-hydroxybenzoic acid efflux pump subunit [Source:NCBI gene (formerly Entrezgene);Acc:817427]
identity=34; qcov=1.06; evalue=6.02e-108; confidence=low
RiceOs11g0100300
-
identity=28.5; qcov=1.1; evalue=1.4e-40; confidence=low
GOGO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG-
PfamPF04632 (FUSC); PF13515 (FUSC_2)
InterPro-
eggNOG-
NRGeneID:131016689

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Subcellular Localization Top 5

RankLocationChineseScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057801376.1
2 Endoplasmic reticulum 内质网 0.20000 XP_057801376.1
3 Vacuole 液泡 0.20000 XP_057801376.1
4 Vacuole membrane 液泡膜 0.20000 XP_057801376.1
5 Nucleus 细胞核 0.00000 XP_057801376.1

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position REF ALT Type Effect Carriers Samples
Chr3:40310812 C T EMS_canonical_SNV CDS_variant 4 B13,B33,C13,D6
Chr3:40310841 C T EMS_canonical_SNV CDS_variant 4 A3,B124,B49,B79
Chr3:40312065 G A EMS_canonical_SNV CDS_variant 1 B132
Chr3:40312083 C T EMS_canonical_SNV CDS_variant 5 A15,B10,B12,B51,B55
Chr3:40312436 C T EMS_canonical_SNV CDS_variant 5 B118,B31,B69,B81,D5
Chr3:40312486 C T EMS_canonical_SNV CDS_variant 1 B69
Chr3:40312521 G A EMS_canonical_SNV CDS_variant 2 A9,B65
Chr3:40312687 C T EMS_canonical_SNV CDS_variant 1 B132
Chr3:40312898 G A EMS_canonical_SNV CDS_variant 4 B97,C41,C64,C9
Chr3:40312933 G A EMS_canonical_SNV CDS_variant 1 C46
Chr3:40312949 C T EMS_canonical_SNV CDS_variant 1 B132
Chr3:40312961 C T EMS_canonical_SNV CDS_variant 1 D11

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057801376.1
610 aa
N
1
305
610
FUSC
FUSC_2
C
PF04632 FUSC 241-454 aa PF13515 FUSC_2 254-379 aa
Protein ID Source Domain ID Domain name Type Start aa End aa E-value Score Description
XP_057801376.1 Pfam PF04632 FUSC Family 241 454 3.4e-11 43.2 Fusaric acid resistance protein family
XP_057801376.1 Pfam PF13515 FUSC_2 Family 254 379 1.2e-11 45.6 Fusaric acid resistance protein-like

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XM_057945393.1
GCAGTGCTTAGTGATGGGTCGAGTGGTGGCTTCATGCACCCTTTGTACGTTGCTGCGAGTACTGCTCTAGGAGCCTTGGCATCCGTCTTCGCTTTGCTCCTTCCCTTCCCGGCTCTTGCCTCTCATAAGGTGGAAGAGCTGTGCCGAGTGTATGCTGAGAATGCTTCAGAAAGAATGAATGTATACCTACGCGCTCTAACGGCGACGGACAAGCATACTAAGATACACCTCATCTCACAAGCCAAGACCTTGTCCGAAAC...

CDS

1 records

Download CDS FASTA
LOC131016689
ATGCACCCTTTGTACGTTGCTGCGAGTACTGCTCTAGGAGCCTTGGCATCCGTCTTCGCTTTGCTCCTTCCCTTCCCGGCTCTTGCCTCTCATAAGGTGGAAGAGCTGTGCCGAGTGTATGCTGAGAATGCTTCAGAAAGAATGAATGTATACCTACGCGCTCTAACGGCGACGGACAAGCATACTAAGATACACCTCATCTCACAAGCCAAGACCTTGTCCGAAACAGGAGCCAAGCTTTTGCAGACTATCAAAATCTT...

Protein

1 records

Download Protein FASTA
XP_057801376.1
MHPLYVAASTALGALASVFALLLPFPALASHKVEELCRVYAENASERMNVYLRALTATDKHTKIHLISQAKTLSETGAKLLQTIKILEDGLWWERPWSKAIKPGERLQSMELEMRGIEYSLISSATIIPFQAVEQHQISQISQAISTRIEERIQQLRCYSPFNSKVESETRQLMANSSSLLELKLPNPKQGWLYFYFSCIHMFLNDTVCCNSAASRNPETKAQGIATRFKHWIHKLTTHDRLLFATKCSLCLSLAVLLGL...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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