当前解析结果
SmilChr03G002533| 统一新 Gene ID | SmilChr03G002533 |
|---|---|
| 名称 | SmilChr03G002533 |
| 描述 | uncharacterized SmilChr03G002533 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 40387035 - 40393166 / - |
| NCBI Gene ID | LOC131018800 |
|---|---|
| GeneID | 131018800 |
| locus_tag | - |
| NCBI Name | LOC131018800 |
| 原始查询 | SmilChr03G002533 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=26.9; qcov=0.304; evalue=5.76e-41; confidence=low |
| Rice | Os06g0484800- identity=28.8; qcov=0.611; evalue=1.5e-100; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT); PF14529 (Exo_endo_phos_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018800 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803492.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057803492.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057803492.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803492.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803492.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:40387045 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A18,B44,B5,B57,B91,C55,D4,D8 |
Chr3:40387066 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C21,D10 |
Chr3:40387092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B4,B40,B78,C77 |
Chr3:40387105 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A9,B108,B57,B76,C36,C49,C65,C8,C82 |
Chr3:40387112 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B123,B76,C53 |
Chr3:40387112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B76,C53 |
Chr3:40387121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B48,C60,C73 |
Chr3:40387127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:40387133 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C8,C82 |
Chr3:40387133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C8,C82 |
Chr3:40387140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,C83,C85 |
Chr3:40387149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803492.1PF14529
Exo_endo_phos_2 114-213 aa
PF00078
RVT_1 492-751 aa
PF13966
zf-RVT 1005-1087 aa
PF13456
RVT_3 1138-1180 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803492.1 |
Pfam | PF14529 |
Exo_endo_phos_2 | Domain | 114 | 213 | 6.4e-07 | 30.0 | Endonuclease-reverse transcriptase |
XP_057803492.1 |
Pfam | PF00078 |
RVT_1 | Domain | 492 | 751 | 7.5e-31 | 108.3 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803492.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1005 | 1087 | 2.9e-17 | 63.8 | zinc-binding in reverse transcriptase |
XP_057803492.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1138 | 1180 | 5.7e-07 | 30.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。