当前解析结果
SmilChr03G002542| 统一新 Gene ID | SmilChr03G002542 |
|---|---|
| 名称 | SmilChr03G002542 |
| 描述 | DNA topoisomerase 6 subunit A |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 40581936 - 40588808 / - |
| NCBI Gene ID | LOC131016703 |
|---|---|
| GeneID | 131016703 |
| locus_tag | - |
| NCBI Name | LOC131016703 |
| 原始查询 | SmilChr03G002542 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA topoisomerase 6 subunit A |
| 产物 | DNA topoisomerase 6 subunit A |
| Arabidopsis | AT5G02820 (RHL2)Spo11/DNA topoisomerase VI, subunit A protein [Source:NCBI gene (formerly Entrezgene);Acc:831314] identity=81.9; qcov=0.637; evalue=0; confidence=high |
| Rice | Os03g0284800 (OsTOP6A3)Topoisomerase 6 subunit A3 [Source:NCBI gene (formerly Entrezgene);Acc:4332468] identity=71.8; qcov=0.628; evalue=0; confidence=high |
| GO | GO:0000228 (nuclear chromosome); GO:0000706 (meiotic DNA double-strand break processing); GO:0003677 (DNA binding); GO:0003918 (DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity); GO:0005524 (ATP binding); GO:0006265 (DNA topological change); GO:0007131 (reciprocal meiotic recombination); GO:0042138 (meiotic DNA double-strand break formation) |
| KEGG | - |
| Pfam | PF00578 (AhpC-TSA); PF04406 (TP6A_N); PF13911 (AhpC-TSA_2); PF21180 (TOP6A-Spo11_Toprim) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016703 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057801387.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057801387.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801387.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801387.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801387.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:40582278 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,D11 |
Chr3:40582383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C53,C54 |
Chr3:40582460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr3:40582464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B129,B42,B43,B90 |
Chr3:40582710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:40582926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B82,D5,D7 |
Chr3:40583067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B32,C28 |
Chr3:40585925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B73,C47,C71 |
Chr3:40586156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B80 |
Chr3:40586899 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | C56 |
Chr3:40586899 |
T |
TG |
1bp_insertion | CDS_variant | 1 | C56 |
Chr3:40587630 |
CT |
C |
1bp_deletion | frameshift_variant | 9 | A11,B131,B21,B40,B52,B94,C14,C61,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801387.1PF00578
AhpC-TSA 93-183 aa
PF13911
AhpC-TSA_2 130-246 aa
PF04406
TP6A_N 364-425 aa
PF21180
TOP6A-Spo11_Toprim 474-644 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801387.1 |
Pfam | PF00578 |
AhpC-TSA | Domain | 93 | 183 | 9.9e-08 | 32.7 | AhpC/TSA family |
XP_057801387.1 |
Pfam | PF13911 |
AhpC-TSA_2 | Domain | 130 | 246 | 3.8e-18 | 66.7 | AhpC/TSA antioxidant enzyme |
XP_057801387.1 |
Pfam | PF04406 |
TP6A_N | Domain | 364 | 425 | 6.3e-22 | 77.9 | Type IIB DNA topoisomerase |
XP_057801387.1 |
Pfam | PF21180 |
TOP6A-Spo11_Toprim | Domain | 474 | 644 | 1.6e-67 | 227.5 | Topoisomerase 6 subunit A/Spo11, Toprim domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。