当前解析结果
SmilChr03G002549| 统一新 Gene ID | SmilChr03G002549 |
|---|---|
| 名称 | SmilChr03G002549 |
| 描述 | uncharacterized SmilChr03G002549 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 40668849 - 40670820 / - |
| NCBI Gene ID | LOC131016709 |
|---|---|
| GeneID | 131016709 |
| locus_tag | - |
| NCBI Name | LOC131016709 |
| 原始查询 | SmilChr03G002549 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0283400; species=rice; confidence=weak |
| 产物 | hit=Os03g0283400; species=rice; confidence=weak |
| Arabidopsis | AT2G37300 (ABCI16)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:818307] identity=55.1; qcov=0.143; evalue=4.9e-08; confidence=weak |
| Rice | Os03g0283400- identity=56.1; qcov=0.24; evalue=4.42e-17; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016709 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057801391.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057801391.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057801391.1 |
| 4 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057801391.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057801391.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:40669042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr3:40669058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B122,C44,C8,C82 |
Chr3:40669077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr3:40669086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C37 |
Chr3:40669092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,B46,C37 |
Chr3:40669128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B5,B57 |
Chr3:40669172 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | C83 |
Chr3:40669172 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | C83 |
Chr3:40669208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B5,B57 |
Chr3:40669210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,C34 |
Chr3:40669239 |
AAG |
A |
2bp_deletion | frameshift_variant | 2 | B123,C37 |
Chr3:40669239 |
AAG |
A |
2bp_deletion | CDS_variant | 2 | B123,C37 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。