当前解析结果
SmilChr03G002552| 统一新 Gene ID | SmilChr03G002552 |
|---|---|
| 名称 | SmilChr03G002552 |
| 描述 | kinesin-like protein KIN-5D |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 40704100 - 40709620 / - |
| NCBI Gene ID | LOC131016712 |
|---|---|
| GeneID | 131016712 |
| locus_tag | - |
| NCBI Name | LOC131016712 |
| 原始查询 | SmilChr03G002552 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-5D |
| 产物 | kinesin-like protein KIN-5D |
| Arabidopsis | AT3G45850 (AT3G45850)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823728] identity=47.1; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0117798 (KIN5A)- identity=48.6; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding); GO:0008574 (plus-end-directed microtubule motor activity) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016712 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057801395.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057801395.1 |
| 3 | Spindle pole | Spindle pole | 0.80000 | XP_057801395.1 |
| 4 | Chromosome | 染色体 | 0.40000 | XP_057801395.1 |
| 5 | Phragmoplast | Phragmoplast | 0.40000 | XP_057801395.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:40704393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,C85 |
Chr3:40704623 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B102,B76,C83 |
Chr3:40704647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr3:40704650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr3:40704847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr3:40704958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C77 |
Chr3:40704972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B118,B22,C13,C50 |
Chr3:40704999 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B4 |
Chr3:40705182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B12,B124,B49,B79 |
Chr3:40705323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B22,C13,C50 |
Chr3:40705767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B48,C60,C73 |
Chr3:40705790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B126 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801395.1PF16796
Microtub_bd 44-195 aa
PF00225
Kinesin 50-381 aa
XP_057801396.1PF00225
Kinesin 39-267 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801395.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 44 | 195 | 1.9e-26 | 93.5 | Microtubule binding |
XP_057801395.1 |
Pfam | PF00225 |
Kinesin | Domain | 50 | 381 | 1.5e-111 | 373.3 | Kinesin motor domain |
XP_057801396.1 |
Pfam | PF00225 |
Kinesin | Domain | 39 | 267 | 4.3e-78 | 263.3 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。