当前解析结果
SmilChr03G002553| 统一新 Gene ID | SmilChr03G002553 |
|---|---|
| 名称 | SmilChr03G002553 |
| 描述 | uncharacterized SmilChr03G002553 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 40711298 - 40712479 / + |
| NCBI Gene ID | LOC131018806 |
|---|---|
| GeneID | 131018806 |
| locus_tag | - |
| NCBI Name | LOC131018806 |
| 原始查询 | SmilChr03G002553 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=weak |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G09510 (AT3G09510)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108] identity=22.9; qcov=0.845; evalue=2.1e-11; confidence=weak |
| Rice | Os03g0158600- identity=29; qcov=0.333; evalue=5.99e-10; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018806 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803497.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057803497.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803497.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803497.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803497.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:40711306 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B78,B98,D11 |
Chr3:40711348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C27,C45,C50 |
Chr3:40711366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B90,C16,C73,D3 |
Chr3:40711367 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B114,B90,C73 |
Chr3:40711367 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B90,C73 |
Chr3:40711376 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,D11 |
Chr3:40711398 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C16,C62,D3 |
Chr3:40711403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr3:40711440 |
G |
A |
EMS_canonical_SNV | stop_gained | 64 | A1,A13,A20,A25,A4,A6,A7,B101,B105,B112,B115,B12,B121,B122,B126,B127,B129,B13,B130,B133,B137,B14,B17,B2,B21,B30,B34,B4,B44,B46,B47,B52,B54,B61,B64,B72,B78,B81,B84,B89,B95,C1,C10,C16,C19,C20,C22,C23,C27,C29,C30,C33,C34,C37,C47,C52,C59,C70,C81,C83,C87,C9,D1,D5 |
Chr3:40711460 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B92,D11 |
Chr3:40711508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B46,C37,D5 |
Chr3:40711510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,C42,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803497.1PF13966
zf-RVT 32-111 aa
PF13456
RVT_3 241-360 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803497.1 |
Pfam | PF13966 |
zf-RVT | Domain | 32 | 111 | 8.2e-17 | 62.4 | zinc-binding in reverse transcriptase |
XP_057803497.1 |
Pfam | PF13456 |
RVT_3 | Domain | 241 | 360 | 1.5e-16 | 61.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。